Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00473 ATGAACGCTGTGGGGATACTAGGTAGCTACATTTCGAAGGGCGTTTATACCGTTGCTGCGCCATTTCATCCGTTTGGCGGAGCTGTGGACATTGTTGTAGTTGAACAGCAGGATGGTAGTTTTAAATCATCGCCTTGGTATGTACGGTTTGGGAAATTTCAAGGTGTTTTGAAGGCAAGGGAGAAGCTGGTCAATATAATTGTAAATGGGGTTGAAGCTAATTTTGCGATGTGTTTGGATCATAATGGAGAAGCTTATTTTTTGAGGGAAGTTGATGTTGAAGGAGAATCTGGACCTTATCCTGAGGGGAAATTGCTGCATGAACTGAATGGTGGGCGGATCCTCAGTTCACAAAGTTGCAAATGTGATGCTAGGAGTTCGATTGATGGGATTGAAACGAGTAAGGATAATGGGAAGATCCTGATGAAGACTAGCTCTCGACAACGGATACTTGGATTTGTTTGGGGTCGTAGTAAAACCGTTAAAGAAGATCATCGTGAGGATACATCTATTGCAAGGATAAACTCACTGGAGTGTGCTGAGATGGCAGCTGATCTTTTAGAGGTTAGGTGGTCTACCAATCTAAGCAAACAAAAGCTTGAGAAATCAGATTCTTCCAAGTTTACTTCCACTGATACTTCAAACAGCAAAGATGAAGAAAAGTTGAAGAGAAACGATGGGAACAACCACGTCGCATCAGCAGTCGAAGGTATCATGGGAAATAATCTCGAGAAAAACTGTGATACCTGCAGAGAGCACATAACCAATGGCTCTCAATTACCATTGGAAGACGTAGAGCTTAGAGAAATATCAAGTTTAAATTCCAAGGATGGAGTGGTCGAAACTTCCATTATCGGGGAAAAGGCTTTCGACGAGACATATGAAGTGAAATCTGCAGCAATAGATACTGTAAAGAATTCCAAACATACTGTTGATGCGATGGGAACCATCCCTGCAAATGCAAATTCCAAATCCCAAATTTCATCGTCAAAGAACCGTGATTCATATAACGGACACAGGGAGAACTTTATACGAGAGCGCTTATCTGATGAAACAAATATTGTTTCACAAGTATTCAGTAATTCTGAAGACAATAGTGAACCTGATGCAGTCCGATCCTCAATGTTCTATGAAACTTCCAAGAGCTTAATGTCGACATTGGATGATTCAGTGGTACTGACTCATAAATTCTCCCACCTGGCCAACGGAGGATCCGGGATCGCTAGAGTCCATACTGAGGGATTGCATGTGACAACTGAAGTTCAGCCGGAGGATACAGATTCTAGCATGGTAGCGGAAGATTTTGATCTAGAGACTGAAAAAGTTGAAGTCCTTATGAACTATTCTCAACAAGTAGATCATTGTAATACTTCTGTCTATGAAGTAAACACAATGGACCAAGGAAAGTCACTGACACTCGAAGCTGCCTATTCTCAAATAGTCTCCACAGAAGAAAGGCCTGGTTCAGTTAAAGAATTGAAGTCTGATAACATAGTTTCAAGTTTCACCTCGGACTTTCAAGATGACGAAAGTGTGGATGGAAGTGTCACAAGCAAGTTCCAAAATTCTTTGAATTCTATTGATAATAGAGTCATAACAAAGGAAAGCCATATAATTCCATCATCAAATTCAGATGATGAAGAATTCCTTTTCAGTAATTTTGATGTTTCAGAAACCGAGGTAAATGGGAATGTAGGGTCAGACAGCCACCATTACAGTGATAAAGAAGAGTATCCATTAGTATATCCAAGTAGCACTGATGAAGAGGATAGATTTGTAACTAAAAGTTTTGAGACATGCACTTCTATTGATAGTCATGAGATCTTCAGTCAGGGGATCGCAAGTCCCATCACGATTCCTCAAAGCCACGCAATTTCTGATACAGAAGTTGATCGTCTGGCAGCATCATTACCCAATATGCAGGCCGATATTAATAATTCAATTGCCTCTGAGATCAATCATCCTCTAAGCCACTCTGTAGACTCAAATTCCAAACCATTAAAGTGGATGGAATTGTGTAAAGATGGTTCAAGCTCCAAGCTTGGTGGAGATGGAGAAGAGAAAGCGGCAGAGGAATGCTCAAAAACCAAAGAATCCTTGGCTTCAGAAGAACAAAGTCTTCTTCCGAATTCTACAGTGGGTAGTCCAGCAGAAGCAACGGCTGTCCCAGTTGGAAACTGGAAACTTTGGCCTTTCTCTTTCAAAAGATCTAGTTCTGGAAAAGTAACTCCATCAGCTGTTGATGGTTACACAGATTTTGATACTAAGAAGGGTTCAGATAGGAACATAGGCGTGGATGGAGAAGTGAGCATCTTTAAGCGCAAAGCGGAGAAAAAGATGGTTAGATTCATCTCGCCAACATCTAAGCAGCTGGCATCCTTAAACCTAAAGGAAGGGGGAAACACGGTAACTTTCACATTCTACACTGCAGTGCTGGGGAAACAGGAGGTTGATGCCAGGATTTATTTGTGGAAATCGAATACTCGCGTAGTGATATCAGATGTGGATGGAACAATAACAAAATCGGATGTTCTAGGTCAATTCATGCCCTTTGTTGGAATGGATTGGTCACAAACAGGCGTCACAAATTTATTTTCTGCTATTAAGGAAAATGGATACCAATTGCTTTTTCTTAGTGCACGATCAATATCTCAGGCCTATCACACCCGCCAATTTCTTTTCAACCTCAAGCAGGATGGGAAGGCTTTGCCAGAGGGGCCTGTTGTCATCTCCCCTGATGGCCTTTTCCCTTCACTATATCGAGAAGTTATTCGGCGGGCTCCTCACGAGTTCAAGATTGCATGCTTGGAGAGAATCAGAGAACTATTTCCTCCGGATTGCAATCCATTTTATGCTGGCTTTGGAAACAGGGAAACGGATGAATTCAGCTACCTTAAAGTTGGAATTCCAAAGGGGAAAATCTTCATTATTAATCCCAAGGGGGAGGTTGCTGTAAACCGTCGCGTCGACACAAAATCTTACGCTTCGCTTCACACCCTCGTCAATGGCATGTTTCCACCCATTACCTCGTCCGAGCAGGTTGCGAGGACTTCAATTCATGGAATTACTGGAAATTACCACCTCCCTTGA 3090 41.97 MNAVGILGSYISKGVYTVAAPFHPFGGAVDIVVVEQQDGSFKSSPWYVRFGKFQGVLKAREKLVNIIVNGVEANFAMCLDHNGEAYFLREVDVEGESGPYPEGKLLHELNGGRILSSQSCKCDARSSIDGIETSKDNGKILMKTSSRQRILGFVWGRSKTVKEDHREDTSIARINSLECAEMAADLLEVRWSTNLSKQKLEKSDSSKFTSTDTSNSKDEEKLKRNDGNNHVASAVEGIMGNNLEKNCDTCREHITNGSQLPLEDVELREISSLNSKDGVVETSIIGEKAFDETYEVKSAAIDTVKNSKHTVDAMGTIPANANSKSQISSSKNRDSYNGHRENFIRERLSDETNIVSQVFSNSEDNSEPDAVRSSMFYETSKSLMSTLDDSVVLTHKFSHLANGGSGIARVHTEGLHVTTEVQPEDTDSSMVAEDFDLETEKVEVLMNYSQQVDHCNTSVYEVNTMDQGKSLTLEAAYSQIVSTEERPGSVKELKSDNIVSSFTSDFQDDESVDGSVTSKFQNSLNSIDNRVITKESHIIPSSNSDDEEFLFSNFDVSETEVNGNVGSDSHHYSDKEEYPLVYPSSTDEEDRFVTKSFETCTSIDSHEIFSQGIASPITIPQSHAISDTEVDRLAASLPNMQADINNSIASEINHPLSHSVDSNSKPLKWMELCKDGSSSKLGGDGEEKAAEECSKTKESLASEEQSLLPNSTVGSPAEATAVPVGNWKLWPFSFKRSSSGKVTPSAVDGYTDFDTKKGSDRNIGVDGEVSIFKRKAEKKMVRFISPTSKQLASLNLKEGGNTVTFTFYTAVLGKQEVDARIYLWKSNTRVVISDVDGTITKSDVLGQFMPFVGMDWSQTGVTNLFSAIKENGYQLLFLSARSISQAYHTRQFLFNLKQDGKALPEGPVVISPDGLFPSLYREVIRRAPHEFKIACLERIRELFPPDCNPFYAGFGNRETDEFSYLKVGIPKGKIFIINPKGEVAVNRRVDTKSYASLHTLVNGMFPPITSSEQVARTSIHGITGNYHLP 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2884374 2891335 + CmoCh12G004730.1 Cmo12g00473 393161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00473 1029 PANTHER LIPIN 1 1018 IPR026058 -
Cmo12g00473 1029 SUPERFAMILY HAD-like 822 972 IPR036412 -
Cmo12g00473 1029 Pfam LNS2 (Lipin/Ned1/Smp2) 784 1006 IPR013209 -
Cmo12g00473 1029 PANTHER GH19076P 1 1018 - -
Cmo12g00473 1029 Pfam lipin, N-terminal conserved region 12 95 IPR007651 -
Cmo12g00473 1029 MobiDBLite consensus disorder prediction 213 227 - -
Cmo12g00473 1029 MobiDBLite consensus disorder prediction 202 229 - -
Cmo12g00473 1029 SMART lns2 830 986 IPR031315 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00473 K15728 LPIN; phosphatidate phosphatase LPIN [EC:3.1.3.4] - csv:101221733 1460.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00189 Cmo12g00473 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00327 Cmo-Chr6:1596622 Cmo12g00473 Cmo-Chr12:2884374 1.03E-38 dispersed
Cmo07g01003 Cmo-Chr7:4921982 Cmo12g00473 Cmo-Chr12:2884374 5.79E-32 dispersed
Cmo12g00473 Cmo-Chr12:2884374 Cmo14g00164 Cmo-Chr14:737005 1.02E-38 dispersed
Cmo12g00473 Cmo-Chr12:2884374 Cmo05g00189 Cmo-Chr5:844883 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g778 Blo01g01534 . . . Bpe02g00423 . . Bma01g02284 Cmo05g00189 Cmo12g00473 . . . Car12g00499 Sed11g0970 . Cpe07g00473 Bhi04g00335 Tan02g1871 . . . . Lcy13g2049 Cla08g01556 Cam08g2051 Cec08g1628 Cco08g1761 Clacu08g1737 . Cre08g1523 . . Cone17ag0842 Cone20ag0186 . . . Cme03g02024 Blo17g00849 . Bda08g01343 . . Bpe05g00055 . . . . . Cma12g00531 Cma05g00190 Car05g00160 . Cpe11g00159 . . . . . . . . . . . . . . . Lsi08g01459 Csa02g01979 Chy03g01528 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006092 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00473 Cmo_Chr12 FPKM 9.59191 10.812472 17.033464 15.311787 12.368203 11.70262 11.792877 6.972669 7.201716 6.2216