Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00494 ATGACAGGATCTGAAAGTGAAGCTCCCACTGTAATTGCTTGTAATGGAGACATAGATTTTGAAAGTGGAAGTCTAACAGATCCTGTTGCTAAGGGAGAAAAACATTCTGAAAATCCTGAATTCTTTGCTGCCAAGGATCCACCAGTTATTGTTGGCAATCGCCACAAAATCAGTGGAAAGGATAATAACGTTGCAATGGAGGTTCATTCTCCCAGAACTTCCAATCAAGGTGGTTTAAATAGAGGCTTTATTGAAACTAAGGCACCTATTGTATCTGTGAAGGCAGCTGTGTCTAAATTTGGAGGGATTGTTGATTGGAAAGCTCGTCGAGTCTATTCTATGGTGGAGCTTAGGAAAAGGTCAGAGAAAGCCATGGAGGCAGAATTCGGAGTGTTGAAGGAGCTCGAAAATACTAAACGGCGCATAGAAGAATTAACACTTGAAGTTGGGATTGCACAAACAGAAGAGCAACGGGCAAAACAAGATTCAGAACTTGCCAAGCTTAGACTGGAGGAGATGGAGAAAGGAACCGCTGATGAGAATGATGATGCTCTAGCCAAGGCACAGCTTGAGATGGCGATGGCCGGGCATGCTGCTGCAGTTTCGGAACTGAAATCCATTAAAGAAGAATTGGAAGTACTTCGTGATGAATTTTCTTCGTTAGTGTCCGAGAGAGATTTGGCTGTAAGAAACGCTGATGATGCTCTTGCTGCAGCTAAGGATGGTGAGAAGGCACTACAGGAGCTGGTCACAGAGCTGGTAGCTTTAAAGGAATCAATGAAGTCTGCACAAGCTGCCCATTTAGAAGCAGAAGAGCAAAGGATGGTTGCAGAGGTGGCCAAAGAGCTGGATTGTTCAAAATGGAAGAAAGAGCTAGATGATGCGGAAGAGGAGTTTAGTAGACTCAAGTCGAAAGTTCAATCAATTGAAGACCTTAAACTGAAAGTTAATACTGCCTCGACTTTATTATCGAATTTGAAAGTCGAAATGGTCAATTATATGGAATCGGTAATAAAGGAAGAGGAGATAAGTGATGAACAACTCCTGAAAGGTGAAGTTGCTGAAACTGAAAACAAAGAATCAGCGGTTCATTCAACAAAGAAGGAATTGGAAGAAGTAAAGCTCAACATAGAGAAAGCAATTGCAGAAGTGGAATACTTGAAGATGGCTGCTACTTCGCTAAAATCAGAGCTTGAAGAGGAGAGATCTTCCATGGAAACCACAAAGAAGAGAGAAGGCAGACATTCTGATGAAGCTGCATCACTTGAAGCTGAATTAGACAAGAACATGTCCGAGATCATCGTCGTTCAAGGAAACGAAAGAGAAGCTCGAGGAAATAGTGTAGACCTGACCAATCAATTGAAGCAGGCAGCAGTGGAGGCTGATCAGGCGAAGACGGTTGCTAAGACGGCTCGTGACGACCTGCAAAAGGCAAAGATGGAAGTAGAGCAAACAAAGGCAGAATCAATAGCGATGAAAAGAAGAATAGTTGCAGCTCAGAAGGAGATTGAAGCTTCCAATGCTTCAAAAATGTTGGCATTATCAGCAATCAAAGCACTGCAAGAGAGTGATTCTTCCGAAACCGCGAAAGAAGATTCATCAACCACAGTAACTATTTCACTAGAGGAATACAATGAACTTAGTGAACGAGCCCGCAAGGCCGAGGAGCACGCCAGCTTCAAGATGACAGAAGCAATTTCACAAATCGAGGCCGCTAAGGAATCCGAGGCAAAATGTCAAGAAATGCTGGAAGAAGTTAGTCGTGAACTCGTTGCCAGACAGGAAGGGTTGAAAGCTGCAACAGAAAAGGCTAGTGAGGCCAAGGAGGGAAAGTTAGCAGTAGAACAAGATTTGAGATTATGGAGAGCAAAACAAGAGCAAAAAAGGAAGGACAATAAAGCTAACCAACAAGTAGCAATTCCTACAACAAACCAAACGAGAAGCGTTGAGGCAAAAGAATCAAGAACTGATAAACAAGCAGATTCTCCTGCTCCTCAACAGCCAATTTCAAAGGAACAGACGCCAAAAAGCTTGGTTAGAGCTGAATCATTGGAAAAACCCAAGGAAGGAAAGAAAAAGAAGAGAAGAACCCATGAATCAATCCATGTCCACAAAACCTCCCACGTGAAAGGTAAATCAATGGCAACCAAGGAAGAAGATAATGGTGGAGTCGTGTCATTTTCTCGTTCGCAGCTGCTCCTCTGCTCTTCTTCCCGCTCAGAGACCCAAATCCTATATGTTGCAATGCAAAGACAGAACCAGAATGTACTGAAATGTAAAGCATTACTCAGTGTTGGAAAGCTCGAATCGAGAATAATACCCATTTCAATTCCCTTCTGGTTGTCTGAAAACCCGCATGTTCGATTGTCGATTACAAGGCCCGAAGCTCCACCATATCTGAGTATCAGACATGAATTGATGTTCAAGAGTAAACCCAGAGTTGCTGCTGGAAATCAGGGGGGGTTGTCCGACGAAGACGATGATCTTTGCCCTGTAGAATGTGTGAGGGAGTTCAAGACGGATGAAGAGTTCATCAGAATTCTAGAGAGGGCGAAGGAAAGTGGAGCGCTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGTTGCAAGTACATAGAACAAGGGTTTGCGAAATTGTGCAGGGGATCTGGAGATCAAGAGGCTCCGGTTATCTTCTTGAAGCACAATGTCGTTGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTGAGGATCAAGACAGTGCCACTGTTCCACTTTTATAAAGATGGTGTGTTATTAGAAGCATTTCCCACTAGAGATAAAGAGAGGATTCTTGCAGCCATAACCAAATATTCATCCACTGCTCTTCAATTATGA 2865 43.21 MTGSESEAPTVIACNGDIDFESGSLTDPVAKGEKHSENPEFFAAKDPPVIVGNRHKISGKDNNVAMEVHSPRTSNQGGLNRGFIETKAPIVSVKAAVSKFGGIVDWKARRVYSMVELRKRSEKAMEAEFGVLKELENTKRRIEELTLEVGIAQTEEQRAKQDSELAKLRLEEMEKGTADENDDALAKAQLEMAMAGHAAAVSELKSIKEELEVLRDEFSSLVSERDLAVRNADDALAAAKDGEKALQELVTELVALKESMKSAQAAHLEAEEQRMVAEVAKELDCSKWKKELDDAEEEFSRLKSKVQSIEDLKLKVNTASTLLSNLKVEMVNYMESVIKEEEISDEQLLKGEVAETENKESAVHSTKKELEEVKLNIEKAIAEVEYLKMAATSLKSELEEERSSMETTKKREGRHSDEAASLEAELDKNMSEIIVVQGNEREARGNSVDLTNQLKQAAVEADQAKTVAKTARDDLQKAKMEVEQTKAESIAMKRRIVAAQKEIEASNASKMLALSAIKALQESDSSETAKEDSSTTVTISLEEYNELSERARKAEEHASFKMTEAISQIEAAKESEAKCQEMLEEVSRELVARQEGLKAATEKASEAKEGKLAVEQDLRLWRAKQEQKRKDNKANQQVAIPTTNQTRSVEAKESRTDKQADSPAPQQPISKEQTPKSLVRAESLEKPKEGKKKKRRTHESIHVHKTSHVKGKSMATKEEDNGGVVSFSRSQLLLCSSSRSETQILYVAMQRQNQNVLKCKALLSVGKLESRIIPISIPFWLSENPHVRLSITRPEAPPYLSIRHELMFKSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDFYRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILAAITKYSSTALQL 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3026818 3032460 + CmoCh12G004940.1 Cmo12g00494 393182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00494 954 MobiDBLite consensus disorder prediction 690 710 - -
Cmo12g00494 954 Coils Coil 461 502 - -
Cmo12g00494 954 CDD TRX_family 848 944 - -
Cmo12g00494 954 Coils Coil 197 224 - -
Cmo12g00494 954 Coils Coil 363 411 - -
Cmo12g00494 954 MobiDBLite consensus disorder prediction 396 419 - -
Cmo12g00494 954 Coils Coil 569 589 - -
Cmo12g00494 954 MobiDBLite consensus disorder prediction 19 40 - -
Cmo12g00494 954 MobiDBLite consensus disorder prediction 634 649 - -
Cmo12g00494 954 ProSiteProfiles Thioredoxin domain profile. 810 949 IPR013766 -
Cmo12g00494 954 SUPERFAMILY Thioredoxin-like 828 947 IPR036249 -
Cmo12g00494 954 Pfam Thioredoxin 840 944 IPR013766 -
Cmo12g00494 954 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 64 696 - -
Cmo12g00494 954 Coils Coil 278 329 - -
Cmo12g00494 954 MobiDBLite consensus disorder prediction 624 720 - -
Cmo12g00494 954 MobiDBLite consensus disorder prediction 660 677 - -
Cmo12g00494 954 PANTHER PROTEIN WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 64 696 - -
Cmo12g00494 954 Gene3D Glutaredoxin 824 951 - -
Cmo12g00494 954 Coils Coil 239 273 - -
Cmo12g00494 954 Pfam Weak chloroplast movement under blue light 81 628 IPR008545 -
Cmo12g00494 954 Coils Coil 135 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00494 - - - mcha:111013925 856.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00217 Cmo12g00494 CCT
Cmo01g01902 Cmo12g00494 CCT
Cmo05g00186 Cmo12g00494 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00494 Cmo-Chr12:3026818 Cmo16g00995 Cmo-Chr16:6860685 3.80E-19 dispersed
Cmo01g01902 Cmo-Chr1:13683505 Cmo12g00494 Cmo-Chr12:3026818 2.48E-158 wgd
Cmo12g00494 Cmo-Chr12:3026818 Cmo05g00186 Cmo-Chr5:822086 0 wgd
Cmo12g00494 Cmo-Chr12:3026818 Cmo09g00217 Cmo-Chr9:1010620 3.15E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g771 Blo01g01532 Blo12g00955 . Bda03g00215 Bpe02g00424 . Bma04g00166 Bma01g02280 Cmo05g00186 Cmo12g00494 Cma01g01843 Cma09g00225 Car01g01437 Car12g00505 . Cpe06g00157 Cpe07g00482 Bhi04g00346 . . . Hepe08g1277 . Lcy13g2069 Cla08g01568 Cam08g2065 . Cco08g1776 Clacu08g1751 . Cre08g1537 Cone4ag1570 Cone7ag1382 . Cone20ag0189 Lsi04g01567 Csa04g02403 . Cme03g02043 Blo17g00856 . Bda08g01354 Bda01g01611 . Bpe05g00049 Bma01g00652 Bma05g00073 . Cmo01g01902 Cmo09g00217 Cma12g00549 Cma05g00187 Car05g00157 Car09g00193 Cpe11g00153 Cpe02g00177 Bhi09g03333 Tan01g4801 . . . . . Cla05g02035 Cam05g2185 Cec05g2201 Cco05g2247 Clacu05g2177 Cmu05g2044 Cre05g2172 Lsi08g01470 Csa02g01963 Chy07g00127 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010551 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00494 Cmo_Chr12 FPKM 6.69697 7.408393 3.099231 6.569147 6.388195 6.461544 8.48596 3.708799 2.217658 3.057644