Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00497 ATGGATGGTGGTGATGGAACTGTGAGGCTTGGGGCTCTGAACTTGAAGCCGGATCGGAGCGGCTTTGATTTGGGACCTGATGTGTCTGTTTCGTCTCCGGTGACCAGGCAGAAAGCCGCCGCTGCTAAACAGTTTATAGAGAATCATTACAAGAATTATCTCCAAGGTCTGCAGGATCGCAAAGAGAGACGGAGAACGCTTCAACGAAGAGCGCAAGAAGCTCAGGTATCAGCTGAAGAACAGGAAGAGATGTTGAGGAATTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATTGATGACTTTGAACAATTAACAGTCATCGGTAAAGGTGCATTTGGTGAGGTTAGATTATGTCGTGCAAAGGGAACTGGGGAAATTTTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCCGAGAGGAATTTACTTGCAGAGGTTGATAGTCGATGCATTGTAAAACTCTTCTATTCTTTTCAAGACTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGCGGTGACATTATGACATTACTAATGAGAGAAGACGTTCTGTCGGAGGATGTTGCTCGCTTTTACATAGCAGAGAGCGTTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAGAATGGCCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGATAAGTATTCAAGTATACTTTTGAATGACGAAGATTTAACAGCCCAGCAGGCCAAAAGTGAAGGTCAAGGTCATACTGACACTAATGGATCCCAATGGATGATGCCAAAAGAACAAATTCAACAGTGGAAGCGTAATCGCCGTGCATTGGCTTTTTCAACTGTTGGGACCCTGGATTACATGGCACCTGAAGTATTGCTTAAGAAAGGATATGGGATGGAGTGTGATTGGTGGTCATTAGGGGCTATTATGTATGAAATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTCCGCAAGATAATAAATTGGAGAACTTGCCTGAAATTTCCCGAGGAACCGAAAATCTCAGAGGAAGCCAAGGATCTTATCATTCACTTGCTATGTGATGTTGAAACCAGGTTGGGAACTCGAGGAGTAGAGGAAATAAAGGCACATCCATGGTTCAAAGGGATTCATTGGGATAAGCTGTACGAAATGGAAGCTGCGTACAAACCAACTGTCACAGGAGAACTAGACACTCAGAACTTTGAGAAATTTCCTGAAGTTCAAGACCCTCCATCAGATATGCCAACTGTTGGCCCTTGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTCAAATCACTTGAGAGTACAGGTACAGAAATTCATTCGAACATGTCATGGAAAACACCGTCTCTAGTTTCCTTGTTGGGTCGAATAGATTTGCAAGAAACTGTGATACCAGAAGTTGAGCAAAAGCAGGAAGGATAA 1572 42.18 MDGGDGTVRLGALNLKPDRSGFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRTLQRRAQEAQVSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDVLSEDVARFYIAESVLAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLTAQQAKSEGQGHTDTNGSQWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPKISEEAKDLIIHLLCDVETRLGTRGVEEIKAHPWFKGIHWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSDMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLESTGTEIHSNMSWKTPSLVSLLGRIDLQETVIPEVEQKQEG 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3056487 3061566 - CmoCh12G004970.1 Cmo12g00497 393185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00497 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cmo12g00497 523 Gene3D Transferase(Phosphotransferase) domain 1 194 428 - -
Cmo12g00497 523 Coils Coil 57 101 - -
Cmo12g00497 523 CDD STKc_NDR_like 106 475 - -
Cmo12g00497 523 ProSiteProfiles Protein kinase domain profile. 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00497 523 Pfam Protein kinase domain 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00497 523 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Cmo12g00497 523 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
Cmo12g00497 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 509 - -
Cmo12g00497 523 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo12g00497 523 SUPERFAMILY Protein kinase-like (PK-like) 85 464 IPR011009 -
Cmo12g00497 523 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 509 - -
Cmo12g00497 523 SMART pkinase_C_6 412 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo12g00497 523 SMART serkin_6 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00497 523 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00184 Cmo12g00497 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00497 Cmo-Chr12:3056487 Cmo17g00156 Cmo-Chr17:904544 0 dispersed
Cmo12g00497 Cmo-Chr12:3056487 Cmo05g00184 Cmo-Chr5:809968 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74721 PF00069 Pkinase 1.40E-64 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00497 K08790 - csv:101222805 1003.05