Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00499 ATGAATTTCAAGGATTTTGGGAGTGACCCATCTGCCGGAAACGGCGGAGGAGGTGGGCGGCCTTCTGCTAACCATCCATTAGCGCGGCAATCATCTATCTACTCGCTCACATTCGATGAGTTTCAGAGTATGGGGAGTATAGGGAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGTTGTTGCTGTTGCTGCTGCTGCTGCTAAAGAAGGGGCTGGTGGTGTTAATGGTAGTGGTGGGTATTTGCAGAGACAAGGCTCTTTGACACTGCCACGGACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATGGATGAACATGGTGGTTCTAAAGATGGGAGTATTGTTGCTTCTGGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAGGAATTTTTGTTGAGAGCTGGAGTTGTGAGAGAGGATACTCAATTGAATGGAAACCCCAACAATGGAGGATTCTTTGGCAATAACAATCATATTCCAATTCAATCTTCGAACTTATTGTTGAATGTTAATGGAGTTAGAGCACATCAGCCACAACCAATATTTCCAAAGCAGCCTACTGAGACCACATATGGGTCTCAGCTGCCTTTGTCTAGTGATGGGATTATGGGGCTTGCGGATCAAAGGTTGAGCTCAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGGATGGGAGTGGTTAGCTTAGCAGCTGGGGCCATGCCTGTTGCAACAGGATCTCCAGCAAACCAGCTATCATCTGATGGGATTGGAAAGAGCAATGGTGATACCTCGTCCTTGTCTCCGGTGCCTTATGCGCTTAATGGAGTGCGGGGGAGGAGATGTAATGGGACTCTGGACAGGGTTGTCGAGAGGAGGCAGCGCAGAATGATAAAGAACAGGGAGTCGGCTGCTCGATCGCGGGCTCGAAAGCAGGCTTACACGATGGAGCTGGAAGCGGAGGTGGCGAAGCTAAAAGAGGAAAACCAAGAACTCCGACAAAAACAGAGTGAGCTTGAGCTTGTTAATCAAGTAACGGGCATCACCAATTCTCAATTATTATGTTGTGTGGTTGTTGCAGGCAGAAATCATGGAAATGCACAAGAACCGGGCATTGAAAGTAATGGATACACAACAAGGAACAAAGAAACGATGCTTAAGACGAACGCAGACTGGTCCGTGGTGATTTCGGAGGACGTTATCCGATCTCGGGCCAAAAGAATAATGCTATAG 1293 47.72 MNFKDFGSDPSAGNGGGGGRPSANHPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAVVAVAAAAAKEGAGGVNGSGGYLQRQGSLTLPRTLSQKKVDEVWKDIMDEHGGSKDGSIVASGLQQRQQTLGEMTLEEFLLRAGVVREDTQLNGNPNNGGFFGNNNHIPIQSSNLLLNVNGVRAHQPQPIFPKQPTETTYGSQLPLSSDGIMGLADQRLSSNLMQGSALQGGRMGVVSLAAGAMPVATGSPANQLSSDGIGKSNGDTSSLSPVPYALNGVRGRRCNGTLDRVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQSELELVNQVTGITNSQLLCCVVVAGRNHGNAQEPGIESNGYTTRNKETMLKTNADWSVVISEDVIRSRAKRIML 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3067064 3070207 + CmoCh12G004990.1 Cmo12g00499 393187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00499 430 Gene3D - 310 364 - -
Cmo12g00499 430 SMART brlzneu 308 372 IPR004827 GO:0003700|GO:0006355
Cmo12g00499 430 Coils Coil 328 365 - -
Cmo12g00499 430 MobiDBLite consensus disorder prediction 1 26 - -
Cmo12g00499 430 SUPERFAMILY Leucine zipper domain 312 360 IPR046347 GO:0003700|GO:0006355
Cmo12g00499 430 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 178 - -
Cmo12g00499 430 CDD bZIP_plant_BZIP46 312 359 - -
Cmo12g00499 430 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 315 330 IPR004827 GO:0003700|GO:0006355
Cmo12g00499 430 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 7 178 IPR043452 GO:0003700|GO:0045893
Cmo12g00499 430 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 192 360 IPR043452 GO:0003700|GO:0045893
Cmo12g00499 430 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 192 360 - -
Cmo12g00499 430 Pfam bZIP transcription factor 312 360 IPR004827 GO:0003700|GO:0006355
Cmo12g00499 430 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 310 360 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00499 K14432 ABF; ABA responsive element binding factor - csv:101223043 514.612
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00179 Cmo12g00499 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00499 Cmo-Chr12:3067064 Cmo04g02610 Cmo-Chr4:19022595 1.16E-43 dispersed
Cmo11g01370 Cmo-Chr11:9574499 Cmo12g00499 Cmo-Chr12:3067064 3.46E-86 wgd
Cmo12g00499 Cmo-Chr12:3067064 Cmo19g00618 Cmo-Chr19:6778771 1.45E-90 wgd
Cmo12g00499 Cmo-Chr12:3067064 Cmo05g00179 Cmo-Chr5:772776 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g759 Blo01g01529 . . Bda03g00211 . . Bma04g00163 Bma01g02274 Cmo05g00179 Cmo12g00499 . . . Car12g00510 Sed10g2023 . Cpe07g00488 Bhi04g00358 Tan02g0922 Cmetu01g1641 . Hepe08g1288 . Lcy13g2085 Cla08g01575 . Cec08g1653 Cco08g1784 Clacu08g1760 . Cre08g1544 . . . . . . . Cme03g02053 . . . Bda01g01610 Bpe02g01800 . . . . . . . Cma05g00180 Car05g00153 . Cpe11g00148 . . . . . . . . . . . . . . . . Csa02g01943 Chy03g01549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004657 2 1 2 3 1 0 2 1 1 1 1 1 0 1 1 2 1 3 2 1 1 2 1 1 1 0 1 6 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10733 PF00170 bZIP_1 2.80E-13 CL0018 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00499 Cmo_Chr12 FPKM 0.005188 0.017635 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0