Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00501 ATGCACGCCAAAACCGACTCCGAAGTCACCAGTATTGCGCTCTCTTCTCCCACCAGATCTCCCCGCCGTCCGGTTTACTACGTTCAGAGCCCTTCCAGGGATTCTAACGATGGCGAGAAGACTGCGACGTCGTTTCACTCTACTCCTGTTCTTACTAGTCCCATGGATTCCCCTCCCCATTCTCGCTCCTCCGTCGGCCGTCACTCCAGAGAGTCTTCTTCCAGCAGATTCTCTGGATCTCTCAAACCTGGATCCAGGAAGATCTCTCCCAATGACGTCTCTCGCGGCGGCCATCGGAAGGGACAGAAGCCGTGGAAGGAGTGCGATGTTATTGAAGAGGAAGGTCTTCTCGAAGATGAAGATCGGGAGAGATCTCTTACTCGTCGCTGCTATATCCTCGCTTTTGTTTTGGGATTTTTTGTTCTGTTTTCTCTTTTCGCTTTGATTCTCTGGGGTGCTAGCAGGCCGATGAAGCCCAAGGTCACAATGAAGAGCATTAGATTCAATCAATTCAAAGTCCAAGCCGGTTCAGATTTCACCGGCGTCGCCACCGACATGGCCTCTGTGAATTCCACAGTCAAACTCACATTTAGGAACACCGGAACATTCTTCGGCGTCCATGTCTCTTCAACTCCCGTCGATTTAACCTATTTCGAAATCTCAATCGCATCAGGAGCCGTTAAGAATTTCTATCAATCACGGAAGAGTCAGAGATCTCTCACCATCAACGTAATCGGCACAAGAATCCCACTGTACGGCAGCGGAGAAAGTCTGAGCAGCCCCGCCGGAACTCCTATAACTCCAGTGCCATTGAAACTGAGCTTCGTGATCAGATCCAGAGCCTACGTATTGGGACAATTAGTGAAGCCAAAATTCTACAGACACATCGATTGCCCCATAATTTTCGATCCGAAGAAACTCAACGTTCCCATGTCGCTCAAGAATTGCACAGTCAGCTGA 960 49.69 MHAKTDSEVTSIALSSPTRSPRRPVYYVQSPSRDSNDGEKTATSFHSTPVLTSPMDSPPHSRSSVGRHSRESSSSRFSGSLKPGSRKISPNDVSRGGHRKGQKPWKECDVIEEEGLLEDEDRERSLTRRCYILAFVLGFFVLFSLFALILWGASRPMKPKVTMKSIRFNQFKVQAGSDFTGVATDMASVNSTVKLTFRNTGTFFGVHVSSTPVDLTYFEISIASGAVKNFYQSRKSQRSLTINVIGTRIPLYGSGESLSSPAGTPITPVPLKLSFVIRSRAYVLGQLVKPKFYRHIDCPIIFDPKKLNVPMSLKNCTVS 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3079435 3081321 - CmoCh12G005010.1 Cmo12g00501 393189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00501 319 MobiDBLite consensus disorder prediction 1 104 - -
Cmo12g00501 319 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 60 317 - -
Cmo12g00501 319 MobiDBLite consensus disorder prediction 8 62 - -
Cmo12g00501 319 MobiDBLite consensus disorder prediction 70 87 - -
Cmo12g00501 319 PANTHER PROTEIN, PUTATIVE-RELATED 60 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00501 - - - csv:101203977 508.449
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00174 Cmo12g00501 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00665 Cmo-Chr8:4298109 Cmo12g00501 Cmo-Chr12:3079435 1.70E-76 dispersed
Cmo10g00660 Cmo-Chr10:3031923 Cmo12g00501 Cmo-Chr12:3079435 2.79E-76 dispersed
Cmo11g01765 Cmo-Chr11:12439348 Cmo12g00501 Cmo-Chr12:3079435 7.50E-71 dispersed
Cmo12g00501 Cmo-Chr12:3079435 Cmo17g00767 Cmo-Chr17:7461292 4.10E-85 dispersed
Cmo12g00501 Cmo-Chr12:3079435 Cmo05g00174 Cmo-Chr5:750821 0 wgd
Cmo12g00501 Cmo-Chr12:3079435 Cmo07g00715 Cmo-Chr7:3224389 6.22E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g750 . . . . . . . . Cmo05g00174 Cmo12g00501 . . . Car12g00512 Sed10g1237 . Cpe07g00489 Bhi04g00362 Tan02g1803 Cmetu03g1156 . Hepe08g1293 . Lcy13g2089 Cla08g01579 Cam08g2077 Cec08g1660 Cco08g1788 Clacu08g1763 . Cre08g1548 . Cone7ag1364 Cone17ag0848 Cone20ag0196 . . . Cme03g02057 Blo17g00878 . . . . Bpe05g00028 . Bma05g00039 . . . Cma12g00557 Cma05g00177 Car05g00149 . Cpe11g00145 . . . . . . . . . . . . . . . Lsi08g01483 Csa02g01939 Chy03g01553 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007272 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00501 Cmo_Chr12 FPKM 0.241555 0.133462 3.104126 3.475799 5.467191 5.115835 4.914695 3.481133 3.742196 3.588313