Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00502 ATGGCGGATCTGTATGGAACATCCCCTTCTTCGGATGTTGTTGGTTTGCCTCATGACCCTGAAAATTTCTCTTCCTTCATCAATCAGCATCTTCAAACCACCACTTCTTCTGCTTCTTCCCCATCTTGTGTTTCCTTCAAGAACAAGTTCATGCCGTTCTTGCATTCTCAACCTCCTTGGCACTCTTCGTCTCTGTTTTCGCGGCGGCGGGAGGAGTCCACCTCTGTTGCTGGAGTGTCCTGCATGCTTGATTTTCCCGAGAGTCGGTTTCAGTTGAGTCGTGTTTTGAATCACGCTCAGTTGGATTCTAGATTTGGCGATGCTTCGTATTTGGGTGTGAACTCCACTTGCGCCGCCGTGAAATTGTCGGATCCTGGGGATTTCGTCAAAGAAAGTTCGGATAATAACGTGTTTTCTTCCTCCGGCGCTGTCGATTCTGATACAAATGCGCCGTTCAAGAGAAGAGGTCTTTCATCTGAAAATGATCTTGGGGATTTCAGCTGTGATAGCGAGGGTGCCGATGTGCCTGAAGCTCCATCCAGTACTGATCTACCTCGAAGTTCATCGAAGAGAAGTAGAAGCGCCGAGGTCCATAATATGTCGGAGAAGAGACGACGGAGGAGGATCAATGAGAAAATGAAAGCCCTTCAAAATCTAATTCCTAATTCAAACAAGACGGACAAAGCTTCAATGTTGGATGAAGCAATTGAGTATTTGAAGCAGCTTCAACTTCAAGTTCAGATGTTATCGATGAGAAATGGCTCGAGTTTGCAACCGATGTGCTTGCCAGGAATGCTGCAGCCAATGCAACTACCTCAGATGGGGTTGGACTTCGACGTAGGAAATGCATTTCTAGCATCCAGAAGAGGAATAGACGCGTTGTCTCCCGGCAACGAAGGGTGTCCAATGCAATCGACATTCAATCTGTCCAATAAATGCAACCTTTCAGATCAGTCACTAGCCATCCCTTCTGTACCAAACATCACAACCTCAGAAACCACATTCGGGTTTGAATCAGCAATTCAGGCGTACGATGGACAGTTCGACCTTTCCTCTAATTTCAAGGAAGCCCAACCAGCCACGCAGCTAGATTGCTACGCTCAAACACGGAAGGACTCAGCAAACGCGTCGCGCAACAGGGCGTCTAAATCTAAGCCCTCTTTGAACCCCATTGTCCCAAATGTCTCGAAGGAAATCCAGGAAATACGAATCGACCATTCTCGCGGCTCCATTCATTCTGACCCTGAGTCCTTGCCGGAGGCAGAACAGCTTCAGACGGAACAAGGGAGCCCAGGTAATGGACGCCGTAGAACCCGCATTGAAATTGGGAAGGACCGCCGGGTTTCGTTCCCGGAGAGGGACGGCGGTTCGTGTCACGGTAGTGGAGAAGTTCGGTCCGGTGAGCAGTTGTCGGTGGTTTCGCATTTGGGTTGGGGACATAGGTATACTCTCAGAGAGCTTGAGTGTTCTACTAATGGCTTTGCGGATGAACATGTCATTGGTGAAGGCGGATATGGAATTGTGTACCGTGGTGTTCTTGAGGACAACACTGTGGTAGCCATCAAAAACTTGCTCAATAACAGGTTAACGTACCTCCACGACGGGCTCGAGCCTAAGGTTGTTCACCGTGATATCAAGTCGAGTAACATTTTGCTTGACAAGCAATGGAATCCAAAAGTCTCCGACTTCGGCCTAGCTAAGCTTCTTGGATCAGAGAGGAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGCTATGTAGCTCCCGAGTATGCTAGCACTGGCATGTTGAATGAAAAAAGTGATGTATATAGCTTTGGAATCCTGATTATGGAGATAATTTCAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACTTGGTTGAGTGGCTTAAATCAATGGTTAGTAATCGAAACACTGAGGGAATTCTGGATCCTAAGTTGCCCGAGAAGCCTTCGTCGAGGGTGCTAAAGCGTGCTCTGTTAGTCGCGTTACGGTGCGTGGATCCTAACGTTCAGAAGAGGCCTAAAATGGGGCATGTAATTCATATGCTTGAAGCTGATGAGTTCCCTTTCCGAGATGATCATAGAGCGAGACGGGAACAACCAGGTCGATCGCTGCTAAAGGAAAAGCTCATGGAAAGGCTTGTGAATGAATCTGGAGACAGCAGCGGGTATGAAAGTGGAGCAACTCAAGCAAGCCGACATATATGGAGAAAGCAAGAACATGAAGAACAGCAGCCTCGAGAACCTCACACTCTAAGGTGA 2280 47.89 MADLYGTSPSSDVVGLPHDPENFSSFINQHLQTTTSSASSPSCVSFKNKFMPFLHSQPPWHSSSLFSRRREESTSVAGVSCMLDFPESRFQLSRVLNHAQLDSRFGDASYLGVNSTCAAVKLSDPGDFVKESSDNNVFSSSGAVDSDTNAPFKRRGLSSENDLGDFSCDSEGADVPEAPSSTDLPRSSSKRSRSAEVHNMSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGSSLQPMCLPGMLQPMQLPQMGLDFDVGNAFLASRRGIDALSPGNEGCPMQSTFNLSNKCNLSDQSLAIPSVPNITTSETTFGFESAIQAYDGQFDLSSNFKEAQPATQLDCYAQTRKDSANASRNRASKSKPSLNPIVPNVSKEIQEIRIDHSRGSIHSDPESLPEAEQLQTEQGSPGNGRRRTRIEIGKDRRVSFPERDGGSCHGSGEVRSGEQLSVVSHLGWGHRYTLRELECSTNGFADEHVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRLTYLHDGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKSMVSNRNTEGILDPKLPEKPSSRVLKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDHRARREQPGRSLLKEKLMERLVNESGDSSGYESGATQASRHIWRKQEHEEQQPREPHTLR 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3086885 3094356 - CmoCh12G005020.1 Cmo12g00502 393190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00502 759 Pfam Protein kinase domain 529 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00502 759 Gene3D Transferase(Phosphotransferase) domain 1 512 704 - -
Cmo12g00502 759 SMART serkin_6 494 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00502 759 MobiDBLite consensus disorder prediction 740 759 - -
Cmo12g00502 759 SMART finulus 199 248 IPR011598 GO:0046983
Cmo12g00502 759 MobiDBLite consensus disorder prediction 445 464 - -
Cmo12g00502 759 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
Cmo12g00502 759 MobiDBLite consensus disorder prediction 370 391 - -
Cmo12g00502 759 Pfam Helix-loop-helix DNA-binding domain 197 243 IPR011598 GO:0046983
Cmo12g00502 759 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 254 IPR036638 GO:0046983
Cmo12g00502 759 MobiDBLite consensus disorder prediction 720 759 - -
Cmo12g00502 759 Gene3D - 188 252 IPR036638 GO:0046983
Cmo12g00502 759 MobiDBLite consensus disorder prediction 408 439 - -
Cmo12g00502 759 PANTHER OS01G0323000 PROTEIN 381 528 - -
Cmo12g00502 759 MobiDBLite consensus disorder prediction 189 206 - -
Cmo12g00502 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Cmo12g00502 759 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Cmo12g00502 759 PANTHER OS01G0323000 PROTEIN 529 735 - -
Cmo12g00502 759 Coils Coil 199 219 - -
Cmo12g00502 759 CDD bHLH_AtPIF_like 195 254 - -
Cmo12g00502 759 SUPERFAMILY Protein kinase-like (PK-like) 478 690 IPR011009 -
Cmo12g00502 759 MobiDBLite consensus disorder prediction 419 433 - -
Cmo12g00502 759 MobiDBLite consensus disorder prediction 133 155 - -
Cmo12g00502 759 MobiDBLite consensus disorder prediction 725 739 - -
Cmo12g00502 759 PANTHER RECEPTOR-LIKE KINASE PLANT 381 528 - -
Cmo12g00502 759 PANTHER RECEPTOR-LIKE KINASE PLANT 529 735 - -
Cmo12g00502 759 Coils Coil 232 252 - -
Cmo12g00502 759 MobiDBLite consensus disorder prediction 133 208 - -
Cmo12g00502 759 ProSiteProfiles Protein kinase domain profile. 422 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00502 - - - csv:105434642 617.076
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00172 Cmo12g00502 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00502 Cmo-Chr12:3086885 Cmo05g00173 Cmo-Chr5:747084 1.03E-62 dispersed
Cmo19g00153 Cmo-Chr19:901434 Cmo12g00502 Cmo-Chr12:3086885 2.55E-26 dispersed
Cmo12g00502 Cmo-Chr12:3086885 Cmo03g00987 Cmo-Chr3:7433788 3.57E-36 wgd
Cmo12g00502 Cmo-Chr12:3086885 Cmo05g00172 Cmo-Chr5:742861 0 wgd
Cmo12g00502 Cmo-Chr12:3086885 Cmo07g00710 Cmo-Chr7:3207130 7.54E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g744 . . . . . . . . Cmo05g00172 Cmo12g00502 . . . Car12g00514 Sed10g1234 . Cpe07g00491 Bhi04g00369 Tan02g1798 Cmetu03g0637 . Hepe08g1296 . Lcy13g2092 . . . . . . . Cone4ag1587 Cone7ag1362 . . . . . Cme03g02063 Blo17g00875 . . . . . . Bma05g00041 . . . Cma12g00559 Cma05g00174 Car05g00147 . Cpe11g00143 . . . . . . . . . . . . . . . . Csa02g01934 Chy03g01556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007940 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10734 PF00069 Pkinase 3.40E-25 CL0016 Cmo TF
74722 PF00069 Pkinase 3.40E-25 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00502 Cmo_Chr12 FPKM 8.612779 10.570858 0.98458 1.498595 0.199812 0.435438 0.251508 2.113853 1.66738 2.203033