Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00505 ATGGGATTAACCATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAGCCCTCTCTCTCCCTTGCTTGCACGAAGCGCTTACGACCTCCTCCGCCCACCTCCGCCGCTTCAACGCTCACCGCTTTCGACCTCAAGACCTTCATCAAACCTGATACTAAGAAAGACCCGTCTTCCCCTCGGACCGGAGTTGTGGAGATGCAACCAGGGGGCACACGGTGGAACCCGACGCAAGAACAGATAGCGATATTGGAGATGCTTTATAAGAGAGGAATGAGGACTCCCAATGCTCAACAGATTGAACAAATTACTGCACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTCGAGAGCGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCCGTAACTCCGACGACAACCATCGTCACGGCCGTCCCCTTCGACCCATCGGGAGGGGAAGATAGTCCGTACAAGAGGAAGTGCATGAACTGGGGGTTTGAATGTTTGGTTGAAGATAGAACTCTGGAGTTATTCCCTTTGCACCCAGAAGGCAGATGA 591 51.1 MGLTMKLHHFSPCSWDEPSLSLACTKRLRPPPPTSAASTLTAFDLKTFIKPDTKKDPSSPRTGVVEMQPGGTRWNPTQEQIAILEMLYKRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPVTPTTTIVTAVPFDPSGGEDSPYKRKCMNWGFECLVEDRTLELFPLHPEGR 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3110440 3111322 - CmoCh12G005050.1 Cmo12g00505 393193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00505 196 CDD homeodomain 72 133 IPR001356 GO:0003677
Cmo12g00505 196 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 196 - -
Cmo12g00505 196 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
Cmo12g00505 196 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 196 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cmo12g00505 196 Pfam Homeodomain 72 131 IPR001356 GO:0003677
Cmo12g00505 196 Gene3D - 71 138 - -
Cmo12g00505 196 MobiDBLite consensus disorder prediction 50 74 - -
Cmo12g00505 196 SUPERFAMILY Homeodomain-like 67 136 IPR009057 -
Cmo12g00505 196 SMART HOX_1 69 136 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00169 Cmo12g00505 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00505 Cmo-Chr12:3110440 Cmo13g01029 Cmo-Chr13:8676452 1.77E-29 dispersed
Cmo12g00505 Cmo-Chr12:3110440 Cmo05g00169 Cmo-Chr5:728097 4.60E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10735 PF00046 Homeodomain 1.40E-19 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00505 - - cmax:111496401 372.089