Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00510 ATGGCGCCGCCGTATGCGCTTGATGCTCTGTTCTGCCCGGAGGAGCACTGGGAGGACCAAGAACAAGAACAAGAACAACAACGTTGTACTAATTTAACAAACGAGGATCTGTTCTGGGAAAACGATGAACTAATTTCTCTTCTTGCTCGTGAGAAGCCCAATGAACTCTTTCAAATCATTCAGACTAACCCTTCTCTCGCCGCCGCCCGACGAGCCGCCGTCGAGTGGATGCTGAACGTCAATACCCACTACTCCTTCTCTGTTCTCACGGCTGTTCTCGCCGTCGATTACTTCGATAAGTTCTTGTCGTTTTTTCATTTTCAAACAGATAAGCCATGGATGTTTCACCTCGCTGCTGTTGCTTGTCTCTCTCTTGCTGCCAAAGTGGAGGAGACCCATGTGCCTCTTTTGTTGGACCTTCAAGTTGAAGACAGTAGATATCTGTTTGAAGCCAAGACAATCAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATCATATGTCAAGAAGGCTTGGATTCAACGGCAATATCTGCCGGGAAATTCATTGGTGGTGTGAACGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCAATGGAGCCCCACCTCGACGTTGAATATGATTACCATCTTCTTAACATCCTCAAACTCGACAAGGGGAATGTTGAGCAATGCTGTAAACTAATCTCGGATGCATCGAGAAGAAACAGCCACCATTTTAAAAAACGCAAATTTGGGTCGGTTCCGGGCAGTCCAAACGGTGTCATGGACGTGTCATTCAGCTCCGACAGCTCGAACGACTCGTGGTCGGTGGCTTCGTCGGTTTCATCCTCGCCGGAGCCATTAACAAAGAAAAACAGAGCATTGGATCAAAATTTCGCCGACATTCCTCGCTAG 996 46.79 MAPPYALDALFCPEEHWEDQEQEQEQQRCTNLTNEDLFWENDELISLLAREKPNELFQIIQTNPSLAAARRAAVEWMLNVNTHYSFSVLTAVLAVDYFDKFLSFFHFQTDKPWMFHLAAVACLSLAAKVEETHVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDHMSRRLGFNGNICREIHWWCERTILSVILESDFMSFLPSVMATATMLHVFKAMEPHLDVEYDYHLLNILKLDKGNVEQCCKLISDASRRNSHHFKKRKFGSVPGSPNGVMDVSFSSDSSNDSWSVASSVSSSPEPLTKKNRALDQNFADIPR 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3144150 3145782 + CmoCh12G005100.1 Cmo12g00510 393198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00510 331 PANTHER CYCLINS 20 320 IPR039361 -
Cmo12g00510 331 ProSitePatterns Cyclins signature. 70 101 IPR006671 -
Cmo12g00510 331 Pfam Cyclin, C-terminal domain 172 295 IPR004367 -
Cmo12g00510 331 SMART cyclin_7 75 163 IPR013763 -
Cmo12g00510 331 SUPERFAMILY Cyclin-like 40 170 IPR036915 -
Cmo12g00510 331 PANTHER CYCLIN D3.1 PROTEIN 20 320 - -
Cmo12g00510 331 SMART Cyclin_C_2 172 297 IPR004367 -
Cmo12g00510 331 Pfam Cyclin, N-terminal domain 61 170 IPR006671 -
Cmo12g00510 331 Gene3D - 171 260 - -
Cmo12g00510 331 SUPERFAMILY Cyclin-like 154 267 IPR036915 -
Cmo12g00510 331 CDD CYCLIN 70 162 IPR013763 -
Cmo12g00510 331 MobiDBLite consensus disorder prediction 289 331 - -
Cmo12g00510 331 Gene3D - 55 170 - -
Cmo12g00510 331 MobiDBLite consensus disorder prediction 289 318 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00254 Cmo12g00510 CCT
Cmo01g01869 Cmo12g00510 CCT
Cmo01g01869 Cmo12g00510 ECH
Cmo09g00254 Cmo12g00510 ECH
Cmo05g00163 Cmo12g00510 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00511 Cmo-Chr4:2537126 Cmo12g00510 Cmo-Chr12:3144150 3.98E-87 dispersed
Cmo05g00163 Cmo-Chr5:696188 Cmo12g00510 Cmo-Chr12:3144150 2.58E-156 dispersed
Cmo12g00510 Cmo-Chr12:3144150 Cmo16g00370 Cmo-Chr16:1697863 5.99E-100 dispersed
Cmo01g01869 Cmo-Chr1:13549712 Cmo12g00510 Cmo-Chr12:3144150 6.75E-95 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo12g00510 Cmo-Chr12:3144150 1.20E-70 wgd
Cmo12g00510 Cmo-Chr12:3144150 Cmo19g00602 Cmo-Chr19:6691342 8.31E-80 wgd
Cmo12g00510 Cmo-Chr12:3144150 Cmo07g00695 Cmo-Chr7:3141146 6.03E-85 wgd
Cmo12g00510 Cmo-Chr12:3144150 Cmo09g00254 Cmo-Chr9:1141404 4.26E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00510 K14505 - csv:101205442 451.055