Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo12g00518 | ATGGCTGAGACGCAGAACTCTGTCCGTGTTACTCGTGCTTCCAAGAAGAGAGCTGCCATGGCTTCCATGCCCGAGGATCAGCCCGCCAGTAAAAAGCGGGTGGTTCTTGGAGAGCTTTCGAATATTCAGAACGTTACTGGCTCACTGCCACAGAAGAGGAGGGCCAAATCTCAGATTACCAAATGCAAGCCTAAGAAGAGAACTAAGGTTTGTGTTGCTCCGACGATCAAGACGGCTGTTCTTGAAGATAATGAACCGAAGTTGAGTATTGATGATATCTTGGACGATCCTGAGATGAAGGGACCTTATTCCTCGGATATCTATTCTTATCTTCGCATAATGGAGGCGGAACCGAAAAGAAGGCCGATTCCTAATTACATAGAGAAGATCCAGACGGATGTAAGTGCCAATATGAGAGGTGTTTTGGTTGATTGGATGGTTGAGGTTGCTGAGGAATACAAACTCGGCCCCGATTCTCTGTATCTGTCCATCTCTTACATCGATAGGTACCTATCAATGAACATCCTCAGTAGGCAAAGGCTTCAATTGTTGGGCGTTTCTTCAATGCTTATCGCCTCAAAGTACGAAGAGATCACTCCTCCACATGTGGAAGATTTCTGCTACATAACAGATAATACTTACAGAAGGGACGAGGTTGTGAAAATGGAGGCTGATATACTTAAGTCTTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAACACCAAGTCTGCAATTGGAATTCCTGGGTCATTACCTTGCTGAGCTTAGCCTACTGGACTATAATTTTGTTAAGTTCTTGCCTTCTTTGGTTGCTGCTTCAGCTGTGTTTCTTGCAAAATTCATCATGCGCCCAAAGCTGCATCCTTGGGGTTCAAACATACAACAATACACAGGCTACAAGCCAGCTGATCTGAGGTCGTCTGTGCTTTTGTTACATGATTTGTACATGGCCAGAAGAGGAGGGTCTCTGATTGCTGTGAGAGAGAAATACAAGTTGCATATGTTCAAATGTGTTGCAATGATGCCTTCACCCCCTGAGATACCGTTTTCCTATTTTGAAGAAGCTTAG | 1116 | 43.91 | MAETQNSVRVTRASKKRAAMASMPEDQPASKKRVVLGELSNIQNVTGSLPQKRRAKSQITKCKPKKRTKVCVAPTIKTAVLEDNEPKLSIDDILDDPEMKGPYSSDIYSYLRIMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGPDSLYLSISYIDRYLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKTPSLQLEFLGHYLAELSLLDYNFVKFLPSLVAASAVFLAKFIMRPKLHPWGSNIQQYTGYKPADLRSSVLLLHDLYMARRGGSLIAVREKYKLHMFKCVAMMPSPPEIPFSYFEEA | 371 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3185191 | 3187419 | - | CmoCh12G005180.1 | Cmo12g00518 | 393206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo12g00518 | 371 | Gene3D | - | 106 | 356 | - | - | |
| Cmo12g00518 | 371 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Cmo12g00518 | 371 | PIRSF | Cyclin_A_B_D_E | 1 | 365 | IPR039361 | - | |
| Cmo12g00518 | 371 | PANTHER | CYCLINS | 24 | 370 | IPR039361 | - | |
| Cmo12g00518 | 371 | SMART | cyclin_7 | 241 | 329 | IPR013763 | - | |
| Cmo12g00518 | 371 | SMART | cyclin_7 | 144 | 228 | IPR013763 | - | |
| Cmo12g00518 | 371 | SMART | Cyclin_C_2 | 237 | 360 | IPR004367 | - | |
| Cmo12g00518 | 371 | Gene3D | - | 122 | 235 | - | - | |
| Cmo12g00518 | 371 | SUPERFAMILY | Cyclin-like | 95 | 234 | IPR036915 | - | |
| Cmo12g00518 | 371 | SUPERFAMILY | Cyclin-like | 237 | 362 | IPR036915 | - | |
| Cmo12g00518 | 371 | ProSitePatterns | Cyclins signature. | 139 | 170 | IPR006671 | - | |
| Cmo12g00518 | 371 | Pfam | Cyclin, N-terminal domain | 106 | 234 | IPR006671 | - | |
| Cmo12g00518 | 371 | PANTHER | CYCLIN-A3-1-RELATED | 24 | 370 | - | - | |
| Cmo12g00518 | 371 | CDD | CYCLIN | 138 | 227 | IPR013763 | - | |
| Cmo12g00518 | 371 | Pfam | Cyclin, C-terminal domain | 237 | 359 | IPR004367 | - | |
| Cmo12g00518 | 371 | CDD | CYCLIN | 237 | 328 | IPR013763 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo09g00266 | Cmo12g00518 | CCT | |
| Cmo01g01859 | Cmo12g00518 | CCT | |
| Cmo09g00266 | Cmo12g00518 | ECH | |
| Cmo01g01859 | Cmo12g00518 | ECH | |
| Cmo05g00159 | Cmo12g00518 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo12g00518 | Cmo-Chr12:3185191 | Cmo15g00668 | Cmo-Chr15:3266992 | 6.07E-105 | dispersed | |
| Cmo01g01859 | Cmo-Chr1:13520996 | Cmo12g00518 | Cmo-Chr12:3185191 | 5.72E-168 | wgd | |
| Cmo11g01399 | Cmo-Chr11:9837969 | Cmo12g00518 | Cmo-Chr12:3185191 | 2.76E-85 | wgd | |
| Cmo12g00518 | Cmo-Chr12:3185191 | Cmo05g00159 | Cmo-Chr5:686871 | 0 | wgd | |
| Cmo12g00518 | Cmo-Chr12:3185191 | Cmo09g00266 | Cmo-Chr9:1172689 | 6.91E-162 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo12g00518 | K06627 | - | csv:101206145 | 650.588 |