Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00523 ATGGCTTCGAGTTTCGATCGCTGGGAAAAGGATCCGTTCTTCTCGGCCGCCGAGGAAGTTCAAGAATCTGCCGACAGAATGGAATCAACGTATAGGACGTGGGTACATGCCACGAAAGATACCTCCAGCATTTGGAACTGTGATGAGATCGGTAGAGATTTACGCACTGCTCTTGGCACCACAAAATGGCAGTTAGATGAGTTTGAACGTGCTGTGAAAACGAGTTATGTTAATAGCACGAATGATGATGCGAGAGATAGACACCGGGAGTTTGTTGTAGCAATTGAGGATCAGATTTTAAAAACTCAAAGTTCATTACAAGACTTTTCTCAATCGAAGGGAGAATCCTCAATGCCTTGGATGCAGCTGGATGAAGGTGAAAGCAACGAGCTTGCGTTGTTTCTTTCGGGACCTTCAGCAGGTGAAGACAAAACCGTTAACAATGTTGTTAGTGATGATGAAAATCCACAAGGGACCGATGAAGAATCGGCACCAGCTTGTTCAAGTAATTCTCATGACTATATAGAGGAGAAGTCCCATGGACACCGGAGGACTGCTAGTGCTAGTCCTGACATTGGTTCCTGGAAGATTGCAATTTCTGGGGTTGATTTCCAACAATGTTCTCTAAGTGGACAACCCGAGAAACTTATACGAAAGATCCCGAGTGTTTCAGGGTTTTTAAATGCTGTTGAGTCTGCATCAAAATTCAAGTGGCCAAAGAATGCCTTTAGGAAGCTGAAACTAGTTGATAGGCCTCAAGAAACTAGTTCGATGTTGTTGCAATCTTCTCAATCAGCTAGGGGTATAATTGCTGGATATGAAAGAAGTAAGAGTTGCTTAGATAGTTGCGATGATTTTTACGATAAGCAACTCTATGGCTGGTACGGATCCGTTCAAAGACAGTTTCAAAGGTTTCTATATCAAATGCAGTATAGTCGGCCTGTTCAAGTGACGTTCTCAACGATTCTCGTTATCTCAATCGTTCTGATTGTTCTTCGTGTGCTATGA 1008 43.06 MASSFDRWEKDPFFSAAEEVQESADRMESTYRTWVHATKDTSSIWNCDEIGRDLRTALGTTKWQLDEFERAVKTSYVNSTNDDARDRHREFVVAIEDQILKTQSSLQDFSQSKGESSMPWMQLDEGESNELALFLSGPSAGEDKTVNNVVSDDENPQGTDEESAPACSSNSHDYIEEKSHGHRRTASASPDIGSWKIAISGVDFQQCSLSGQPEKLIRKIPSVSGFLNAVESASKFKWPKNAFRKLKLVDRPQETSSMLLQSSQSARGIIAGYERSKSCLDSCDDFYDKQLYGWYGSVQRQFQRFLYQMQYSRPVQVTFSTILVISIVLIVLRVL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3216344 3219880 - CmoCh12G005230.1 Cmo12g00523 393211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00523 335 MobiDBLite consensus disorder prediction 137 188 - -
Cmo12g00523 335 Gene3D - 9 109 - -
Cmo12g00523 335 SUPERFAMILY t-snare proteins 10 107 IPR010989 GO:0016020|GO:0016192
Cmo12g00523 335 Pfam Syntaxin 6, N-terminal 11 101 IPR015260 GO:0016020|GO:0048193
Cmo12g00523 335 PANTHER EXPRESSED PROTEIN 1 333 - -
Cmo12g00523 335 PANTHER OS05G0443700 PROTEIN 1 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00523 - - - bhj:120075617 551.592
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00152 Cmo12g00523 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00720 Cmo-Chr5:3730355 Cmo12g00523 Cmo-Chr12:3216344 4.52E-37 dispersed
Cmo11g00391 Cmo-Chr11:1950905 Cmo12g00523 Cmo-Chr12:3216344 1.56E-32 dispersed
Cmo12g00523 Cmo-Chr12:3216344 Cmo12g00887 Cmo-Chr12:8125527 1.10E-33 dispersed
Cmo12g00523 Cmo-Chr12:3216344 Cmo05g00152 Cmo-Chr5:666796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g674 . . . . . . . . Cmo05g00152 Cmo12g00523 . . . . Sed11g0927 . Cpe07g00508 Bhi04g00402 Tan02g1760 Cmetu03g1564 . Hepe08g1320 . Lcy13g2123 Cla08g01609 Cam08g2110 Cec08g1695 Cco08g1819 Clacu08g1795 . Cre08g1578 Cone4ag1608 Cone7ag1344 Cone17ag0875 Cone20ag0223 . . . Cme03g02090 Blo17g00868 Blo18g00713 . Bda01g01595 Bpe02g01782 Bpe05g00037 Bma01g00672 Bma05g00048 . . . Cma12g00586 Cma05g00152 Car05g00132 . Cpe11g00128 . . . . . . . . . . . . . . . Lsi08g01513 Csa02g01907 Chy03g01579 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003617 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 3 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00523 Cmo_Chr12 FPKM 2.775583 2.663843 1.644844 2.197982 2.669986 1.27131 3.011083 0.0 0.0 0.0