Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00524 ATGGACGAGTGCGAGCAACTGTGTCTGGCGGCGCGGGGCGGCGACGCCGACAAACTCCGAGCTCTGATAGATTCCGGAGCTGATGTTTCTGTTTTCGACGCTGAGGGCTTTACTCCTCTTATGCACGCAGCCAAGCATGGCCATGCCGACGTTGTTAAAGCCCTTCTGGAAGCTGGTGCGCCATGGAATGCGCTCTCTCCTTCCAATCTTTCTGCTGGGGATTTTTCTCTCGAGGCTGGTCACCAGGAGGTTTTCCAAATTCTTCTTAATGCGGGGATTCAAGCCGAATTGGTTCTTGGGACCATTGCTAGGAAAGAAAGCCGGAATGATGTATGCAATGGGGAGTACTTGGAAGATAGAGTTACTTTTAGTGAAGATAAGGTGATGGATGCTGAAAGCAAAGCTGTCATGATGGCTTGGGAAAAACCATTGATGGAAGCTCATGCTAAGGCTATTTGCATGGGTGGTGGTCACATACTGAACGTTGGATTTGGAATGGGCCTAGTGGACACAGCCATTCAACAATACTCCCCCACTTCACATACAATTGTTGAGGCTCACCCAGAGGTTTATAAACGCATGATCGAAACTGGTTGGGCTGATAAGAACAATGTGAAAATTATATTTGGTCGTTGGCAAGACGTCCTGCCTCAACTTGAATCTTATGATGGTATTTTCTTCGATACGTACGGAGAATACTATGAAGACTTGAGAGAGTTCCACCAACATCTTCCTAAATTGTTAAAGCCTGGGGGAATCTACTCATTTTTTAATGGTCTTTGTGGAGGTAATGCATTTTTCCATGTTGTTTATTGTAATATAGTTTCTCTTGAACTAGAAAATCTGGGCTACTCCACCCAATTCATTCCCTTACCCGTCAAGGATTGTTTGGAGGAAGAAGTCTGGAAAGGAGTTCAGCACAAATATTGGCAACTTGATACATATTACCTTCCTGTTTCTCAGTCTGCTCAAGACTCTGAATCATGA 987 45.19 MDECEQLCLAARGGDADKLRALIDSGADVSVFDAEGFTPLMHAAKHGHADVVKALLEAGAPWNALSPSNLSAGDFSLEAGHQEVFQILLNAGIQAELVLGTIARKESRNDVCNGEYLEDRVTFSEDKVMDAESKAVMMAWEKPLMEAHAKAICMGGGHILNVGFGMGLVDTAIQQYSPTSHTIVEAHPEVYKRMIETGWADKNNVKIIFGRWQDVLPQLESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSFFNGLCGGNAFFHVVYCNIVSLELENLGYSTQFIPLPVKDCLEEEVWKGVQHKYWQLDTYYLPVSQSAQDSES 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3221711 3223942 + CmoCh12G005240.1 Cmo12g00524 393212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00524 328 ProSiteProfiles Ankyrin repeat profile. 35 67 IPR002110 GO:0005515
Cmo12g00524 328 ProSiteProfiles Arginine and arginine-like N-methyltransferase domain profile. 109 328 IPR026480 -
Cmo12g00524 328 Gene3D Vaccinia Virus protein VP39 108 322 IPR029063 -
Cmo12g00524 328 Pfam Ankyrin repeats (3 copies) 7 94 IPR002110 GO:0005515
Cmo12g00524 328 ProSiteProfiles Ankyrin repeat profile. 2 34 IPR002110 GO:0005515
Cmo12g00524 328 CDD AdoMet_MTases 159 254 - -
Cmo12g00524 328 PIRSF Rmt2 1 113 IPR017408 GO:0016274
Cmo12g00524 328 PIRSF Rmt2 103 324 IPR017408 GO:0016274
Cmo12g00524 328 Gene3D - 1 107 IPR036770 -
Cmo12g00524 328 ProSiteProfiles Aspartyl protease, retroviral-type family profile. 19 32 IPR001995 GO:0004190|GO:0006508
Cmo12g00524 328 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 319 IPR029063 -
Cmo12g00524 328 SUPERFAMILY Ankyrin repeat 7 95 IPR036770 -
Cmo12g00524 328 ProSiteProfiles Ankyrin repeat region circular profile. 35 60 - -
Cmo12g00524 328 PANTHER GUANIDINOACETATE N-METHYLTRANSFERASE 4 322 - -
Cmo12g00524 328 SMART ANK_2a 68 97 IPR002110 GO:0005515
Cmo12g00524 328 SMART ANK_2a 2 31 IPR002110 GO:0005515
Cmo12g00524 328 SMART ANK_2a 35 64 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00524 K18477 RMT2; type IV protein arginine methyltransferase [EC:2.1.1.322] - csv:101206863 643.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00524 Cmo-Chr12:3221711 Cmo08g00372 Cmo-Chr8:2326432 6.07E-09 dispersed
Cmo12g00524 Cmo-Chr12:3221711 Cmo20g00274 Cmo-Chr20:1334263 4.69E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g673 Blo01g01499 . Bda01g00583 . Bpe02g00447 . . Bma01g02253 . Cmo12g00524 . . . . Sed11g0923 . Cpe07g00509 Bhi04g00403 Tan02g1758 Cmetu03g1631 . Hepe08g1321 . Lcy13g2124 Cla08g01610 Cam08g2111 Cec08g1696 Cco08g1820 Clacu08g1796 . Cre08g1579 . . Cone17ag0876 Cone20ag0224 . . . Cme03g02091 . . . . . . . . . . . Cma12g00587 . . . . . . . . . . . . . . . . . . . Lsi08g01514 Csa02g01906 Chy03g01580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011845 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00524 Cmo_Chr12 FPKM 6.883256 7.087293 8.385461 8.065507 2.609405 3.806862 3.841862 13.795436 16.664568 13.876736