Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00528 ATGTCCAGGTCCCGAGTTTACGCCGACGTCAATGTTCATCGCCCCAGAGAATACTGGGATTACGAGTCTCTCGCCGTCCAATGGAGGTACTGGGCGTTTCATCCTCTTGAGCATGAATGGCCTTTTCGGAAAATGTGGAAGGAAAACTTGATTGGTCAGGATGATTATGAGGTTGTCCGGAAAGTTGGAAGAGGAAAGTATAGCGAGGTATTTGAAGGTATAAATATCACCAACAATGAAAAGTGCATTATCAAGATTCTTAAGCCTGTCAAGAAGAAGAAGATAAAGAGGGAGATAAAAATACTACAGAATCTTTGTGGTGGCCCAAATGTTGTGAAACTGCTGGATATTGTCAGAGATCAACACTCAAAAACTCCTAGCTTAATCTTTGAATATGTGAACAGTACAGATTTCAAAATTTTGTACCCTACGCTGACCGATTATGACATTCGTTACTACATATATGAGCTTTTGAAGGCATTGGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTAAAGCCTCACAATGTTATGATTGACCATGAACTGCGAAAACTTCGTTTGATTGATTGGGGTCTTGCTGAATTCTACCATCCTGGAAAAGAGTACAATGTTCGAGTAGCATCTAGGTATTTCAAAGGACCGGAACTTCTTGTAGATTTACAAGACTATGACTATTCCTTGGATATGTGGAGCCTGGGTTGTATGTTTGCTGGAATGATTTTTCGGAAGGAACCATTCTTCTATGGTCACGACAATCATGACCAGCTTGTCAAAATTGCCAAGGTTTTGGGGACAGATGAGTTGAATGCGTATCTGAACAAATATCAACTGATTCTTGATCCACAACTTGAAGCCCTTGTTGGAAGGCATAGCCGTAAGCCATGGTCAAGATTTATCAATGGTGATAACCAGCATCTTGTATCCCCTGAGGCCATTGATTTTCTGGATAAGCTTCTTCGGTACGACCATCAAGATAGGCTCACTGCAAGAGAAGCAATGGCTCATCCATACTTCTTCCAGGTGAGAACTGCGGAGAACAGCAGGCTGCGAACGCAATAA 1068 41.85 MSRSRVYADVNVHRPREYWDYESLAVQWRYWAFHPLEHEWPFRKMWKENLIGQDDYEVVRKVGRGKYSEVFEGINITNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKILYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYQLILDPQLEALVGRHSRKPWSRFINGDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFFQVRTAENSRLRTQ 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3236322 3241778 - CmoCh12G005280.1 Cmo12g00528 393216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00528 355 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Cmo12g00528 355 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 355 - -
Cmo12g00528 355 CDD STKc_CK2_alpha 15 341 IPR045216 GO:0004674|GO:0006468
Cmo12g00528 355 ProSiteProfiles Protein kinase domain profile. 56 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00528 355 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 355 IPR045216 GO:0004674|GO:0006468
Cmo12g00528 355 Pfam Protein kinase domain 56 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00528 355 Gene3D Phosphorylase Kinase; domain 1 56 132 - -
Cmo12g00528 355 SUPERFAMILY Protein kinase-like (PK-like) 33 345 IPR011009 -
Cmo12g00528 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Cmo12g00528 355 Gene3D Transferase(Phosphotransferase) domain 1 133 341 - -
Cmo12g00528 355 SMART serkin_6 56 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00528 K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1] - csv:101207500 642.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00672 Cmo-Chr7:3031946 Cmo12g00528 Cmo-Chr12:3236322 0 dispersed
Cmo12g00528 Cmo-Chr12:3236322 Cmo08g00894 Cmo-Chr8:5816537 9.51E-42 dispersed
Cmo12g00528 Cmo-Chr12:3236322 Cmo03g00966 Cmo-Chr3:7246667 1.08E-161 wgd
Cmo12g00528 Cmo-Chr12:3236322 Cmo07g00668 Cmo-Chr7:3010677 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g668 . . . . . . . . . Cmo12g00528 . . . Car12g00534 Sed14g1515 . Cpe07g00511 Bhi04g00405 Tan02g1754 Cmetu11g0428 . Hepe08g1323 . Lcy13g2126 Cla08g01612 Cam08g2113 Cec08g1699 Cco08g1822 Clacu08g1798 . Cre08g1581 . . . . . . . Cme03g02093 . . . . . . . . . . . Cma12g00590 . . . . . . . . . . . . . . . . . . . Lsi08g01516 Csa02g01904 Chy03g01582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000622 5 3 4 4 5 3 4 3 3 3 3 3 5 2 3 3 3 5 3 3 3 4 3 3 2 3 3 5 4 3 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74726 PF00069 Pkinase 8.50E-66 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00528 Cmo_Chr12 FPKM 2.901192 3.062013 0.0 0.0 10.652708 10.318341 10.877251 0.0 0.0 0.0