Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00530 ATGAATAGCTTGCGTCGACGTTGTGGCTTGCTTCTGCGGCCGGTCGCTGCCCGTATCAATGTAATCCCCAAAGCTACCGTCTCTTCTAAGATTCACTGGAGGGCGTATTTCAGTTTCAGGTCATCTCCAATGGGATTCAGAATTAGAGAAAGTAAAATTTCATGCCAATCTTTCTTGCCTTCGTCTCGGCATCGATTCTCTTCCTTCTCTTCTCCATTGAAATCAGGCACTGGAGTTATCCGATGGTATTTAAGGAAACTCGACACCTACCCGTTTATCACTAAAAGTATCAGTTCTTCGCTCATTTATGTGGCTGCTGATCTAACCTCTCAGATGATTACATTGCCATCTCCTGGCTCTTTTGATTTAATAAGGACAACACGGATGGCTGCTTATGGATTGCTGATATTGGGGCCATCCCAGCATTTGTGGTTTAATTTCATGTCCACGGTCTCACCAAGGCGAGATTATTTGTCAACTTTCAAGAAGATTGTTCTAGGGCAGGCTGTGAAAGTGGCAGTGAGATTGCTGCTAGATTACAGCGAGATTTACTTCCAACATTGTTAA 567 43.92 MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAVKVAVRLLLDYSEIYFQHC 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3244237 3246922 + CmoCh12G005300.1 Cmo12g00530 393218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00530 188 PANTHER OS12G0508100 PROTEIN 22 170 - -
Cmo12g00530 188 PANTHER PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 22 170 IPR007248 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00530 K13348 MPV17; protein Mpv17 - csv:101207742 214.927
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00150 Cmo12g00530 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00490 Cmo-Chr4:2443462 Cmo12g00530 Cmo-Chr12:3244237 1.48E-32 dispersed
Cmo12g00530 Cmo-Chr12:3244237 Cmo06g00032 Cmo-Chr6:220928 8.31E-10 dispersed
Cmo12g00530 Cmo-Chr12:3244237 Cmo05g00150 Cmo-Chr5:657611 8.62E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g666 . . . . . . . . Cmo05g00150 Cmo12g00530 . . . Car12g00535 Sed10g1209 . Cpe07g00512 Bhi04g00406 Tan02g1751 Cmetu03g1056 . Hepe08g1324 . Lcy13g2127 Cla08g01613 Cam08g2114 Cec08g1700 Cco08g1823 Clacu08g1799 . Cre08g1582 . . . . . . . Cme03g02094 . . . . . Bpe05g00480 . . . . . Cma12g00591 Cma05g00149 Car05g00129 . Cpe11g00127 . . . . . . . . . . . . . . . Lsi08g01517 Csa02g01903 Chy03g01583 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001548 1 2 1 3 3 2 3 2 2 2 2 2 3 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 7 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00530 Cmo_Chr12 FPKM 2.818565 2.628572 1.908902 0.0 6.673442 5.550331 4.93185 4.319808 5.973856 0.0