Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00536 ATGAGGCCCGACATTTCCCTGTTCGTGTCGAAGGTGATCTTCAGCAGCGATCTCCGGGGAGTTCTCGGGCTGGTGAAAGTCCCTTGTTGCATTATGCAAACCGCTCAAGACGCGTCGGTTCCGGCATCGATGGCTATCTACCTGAGAGACCATCTCGGCGGCCAAAACATCGTGGAGATGCTGCACACCGAAAGCCACCTACCCCATCTCAGTTCTCCTCAGCTACTGGTCCGCAAGCTCCGCCGTGCCCTTTCCCGGTGA 261 57.47 MRPDISLFVSKVIFSSDLRGVLGLVKVPCCIMQTAQDASVPASMAIYLRDHLGGQNIVEMLHTESHLPHLSSPQLLVRKLRRALSR 86
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3269505 3269765 + CmoCh12G005360.1 Cmo12g00536 393224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00536 86 SUPERFAMILY alpha/beta-Hydrolases 11 85 IPR029058 -
Cmo12g00536 86 Gene3D alpha/beta hydrolase 1 85 IPR029058 -
Cmo12g00536 86 PANTHER ESTERASE-RELATED 1 85 - -
Cmo12g00536 86 PANTHER STRIGOLACTONE ESTERASE D14 1 85 IPR031143 GO:0010223|GO:0016787|GO:1901601
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00536 - - - csv:101208472 148.673
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00144 Cmo12g00536 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00536 Cmo-Chr12:3269505 Cmo20g01002 Cmo-Chr20:6032992 2.47E-21 dispersed
Cmo12g00536 Cmo-Chr12:3269505 Cmo05g00144 Cmo-Chr5:637479 2.98E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g652 Blo01g01495 . . . Bpe02g00453 . . Bma01g02246 Cmo05g00144 Cmo12g00536 . . . . Sed11g0920 . . Bhi04g00412 Tan02g1739 Cmetu03g1463 . Hepe08g1330 . . Cla08g01618 Cam08g2120 Cec08g1705 Cco08g1828 Clacu08g1805 . Cre08g1587 Cone4ag1613 Cone7ag1338 Cone17ag0885 Cone20ag0232 . . . Cme03g02099 . . . . . . . . . . . . Cma05g00142 Car05g00124 . Cpe11g00123 . . . . . . . . . . . . . . . Lsi08g01524 Csa02g01898 Chy03g01588 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013637 0 1 0 0 0 1 1 1 2 1 1 1 1 1 1 2 1 0 0 1 2 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00536 Cmo_Chr12 FPKM 18.001938 24.947668 1.207107 0.752952 0.0 0.0 0.0 0.0 0.0 0.0