Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00538 ATGAAAATTAGAGAAAAATCCAGGAGCTTCAAATATCTCTCCAAGCTCAGTGGACTCTCCGTCGTCACCGCCAAGCCCAAGGACGTTCCTTCTTCTCCGGCAGGCTCCACGTCGCCGGAAATGGATCCCGGCATCTGGAGCCGACTTCCACCGGAACTTCTTGATCACGTACTCTCTTTTCTCCCTCTCAGAACCTGTTTTAACCTAAGATCGACTTGTAAGCATTTTGATTCTCTCTTGTATTCTCCTTCTTTCGTCTCTAAGCACTCTGATTCCTCTTTCTCCTCCTTCCTCTTGCTGGCGCATCCGCAATGTTTTCGTCAGTTACCTCTGTACGATTCTGCTCTCGGAACTTGGCGGAGCTTGCCGCTCTCTGTTTCCGTTTCGCTTCCTTCTGGCATTCCTTCTACTGCTCTTGTTTCTACTGCCAACGGCCTCGTTTGCTTCTCTCTTCGAAATTCTTGCTCCTTCGTTGTTTGCAATCTCTTGACCAAATCCTCGAGACTGATCGAATTTCCGTATCATCCATTCGCATTCGAGTTGCTGACGTTGATTTCCGTGCCCCTAGGGTACAAGATTTTCACGCTCTTCTCCGGCTCGTCTCCTGTTTCCGCTTTGGTTTTCGATTCCAGGGATCATTCCTGGCGAAGATTCGACAATTTCGCGCCGATTCTCGGTGATAATCATCGCCAAGAAGCTGCTTGCTATAATGGCCGTTTGTATTTTGTTACGCCAGAACCATTTTCTATTGTTACCTTCGATTTGGAAAATGGCGAGTGGGAGGAACCCGATATCGTAATGCCCGAGGATCTTACGTTTGTTAGATTAGTGAGCGATGGCGATAGGAAATTGTATATGATCGGTGGAATTGGGAGGAATGGGATTTCAAGGAGCTTGAAGCTATGGGAGTTTTCAGAACAGAGAAATTGGGTGGAAATTGAAAATGTGCCGCAGATGATTTGTAAGAAGTTCATGTCGATTTGTTACCACAATTACAAGCACGTTTATTGCTTTTGGCATCAGGGAACCATCTGTCTTTGTTGCCACACTTGGCCGGAGATTTTGTATTACAAATTGAGCAGGAGAACATGGCATTGGCTTCCCAAATGCCCTTCTCTACCGGAAAGATGGAGCTGTGGTTTCAGATGGTTCTCATTTGTGCCAGAATTGTACGCATCTGCCTGA 1185 46.58 MKIREKSRSFKYLSKLSGLSVVTAKPKDVPSSPAGSTSPEMDPGIWSRLPPELLDHVLSFLPLRTCFNLRSTCKHFDSLLYSPSFVSKHSDSSFSSFLLLAHPQCFRQLPLYDSALGTWRSLPLSVSVSLPSGIPSTALVSTANGLVCFSLRNSCSFVVCNLLTKSSRLIEFPYHPFAFELLTLISVPLGYKIFTLFSGSSPVSALVFDSRDHSWRRFDNFAPILGDNHRQEAACYNGRLYFVTPEPFSIVTFDLENGEWEEPDIVMPEDLTFVRLVSDGDRKLYMIGGIGRNGISRSLKLWEFSEQRNWVEIENVPQMICKKFMSICYHNYKHVYCFWHQGTICLCCHTWPEILYYKLSRRTWHWLPKCPSLPERWSCGFRWFSFVPELYASA 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3283018 3284202 - CmoCh12G005380.1 Cmo12g00538 393226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00538 394 SUPERFAMILY F-box domain 34 101 IPR036047 GO:0005515
Cmo12g00538 394 ProSiteProfiles F-box domain profile. 43 97 IPR001810 GO:0005515
Cmo12g00538 394 SMART fbox_2 49 89 IPR001810 GO:0005515
Cmo12g00538 394 Pfam F-box domain 46 81 IPR001810 GO:0005515
Cmo12g00538 394 Gene3D - 103 387 IPR015915 GO:0005515
Cmo12g00538 394 PANTHER F-BOX/KELCH-REPEAT PLANT PROTEIN 45 392 - -
Cmo12g00538 394 Gene3D - 34 85 - -
Cmo12g00538 394 PANTHER F-BOX/KELCH-REPEAT PROTEIN 45 392 - -
Cmo12g00538 394 SUPERFAMILY Galactose oxidase, central domain 109 372 IPR011043 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00538 - - - csv:101208959 666.766
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00142 Cmo12g00538 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00538 Cmo-Chr12:3283018 Cmo15g00228 Cmo-Chr15:1119622 3.46E-30 dispersed
Cmo12g00538 Cmo-Chr12:3283018 Cmo05g00142 Cmo-Chr5:621627 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g649 . . . . . . . . Cmo05g00142 Cmo12g00538 . . . Car12g00542 Sed03g0283 . Cpe07g00516 Bhi04g00416 Tan02g1736 Cmetu03g0956 . Hepe08g1334 . Lcy13g2132 Cla08g01621 Cam08g2123 Cec08g1708 Cco08g1832 Clacu08g1809 . Cre08g1590 . Cone7ag1337 . . . . . Cme03g02102 . . . . . . . . . . . Cma12g00598 Cma05g00139 Car05g00121 . Cpe11g00120 . . . . . . . . . . . . . . . Lsi08g01527 Csa02g01895 Chy03g01591 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007973 0 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00538 Cmo_Chr12 FPKM 124.242607 140.764786 437.346619 429.010406 56.871174 66.393059 52.454433 7.404635 6.445945 6.921141