Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00539 ATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTTGCTAATCGTGTTAAATCCGATCGAGTCAGCAGTCTGCAACTTTCCAATCATAAGGACATTGTCTCTCCCCATCGAGGTTCCGTCAACTCACTTCAGAGCCAAGCACATTGTGCCCTGAGAGTAGTCAAGGCGCATGTCGATTTGACGGAGGGGAGATATTTGTTATCTGGAGCATCAGATGCATCGGCTGCTGTTTTTGATATTCAACGTGCATCTCATTCTGAGGGTCTTATTGCAAAATACCAATGCCTTTTTGCAGTTGATAAGCAGCATGAACATGGACATAAATATGCAATTTCCTCGGCCATATGGTATCCCATTGATACTGGATTGTTTGTCACAGGTTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAACTTTAAATTGCCTGGAAAAGTCTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACGGAAGATGTTCAAGTCCGCCTTTGTGATATTTCATCGGGAGCATTTTCTCACACCTTATCTGGACATCGTGATGGTGTAATGAGTGTAGAATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGCGGATGTGATGGAGCAATTCGTTTTTGGGACATCAGACGAGCTGGATGTTTTCGTGTTCTAGATCAGTCTCAATCCCAGCTCGGGCGACGTCCACCTATTTCAGGATGGACTGCAAATAAGGTCCCTCTCCTCCCTAGTTTGGCTATCACGCTATCAACATCTAAGTCCCACTTGGCCAGCCAAAGTTCAAATATGAAATCTCGCATACTTCATAAGAAACTATCCAATGGAAACGCAACAAAGCCATCATCTACTACAGGTAAACTGCCAGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCCAGCCAGGATCGAGCAGTTTCTCACTACGGTGCTGTTACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTGTGGGATGTCGAATCCGGGTGTAATACACTCGTGAATTATGAAACCGTGAGGTTACATACCAATAAGCCGTTGCAATTAGCCACATCTCAAGACTCAGCCCTTGTATTTGCTCCATGCATGGCAAATATTAAAGCATTTGATATGTGGACAGGGAAGGCATCCCTGACGCTCAGCGGCCATTACGAAGCTGTGAACTGTTGCTTGTATAGTTTCCAGGATCAGGAACTGTACACTGGTGGCAATGATAGGCAAATTCTCGTCTGGTCACCATCCCGGGACTCTACCGAACTGGATTGGGAATCCAGTGCAGACAAAGATAACTGGAGCGACTGA 1413 45.36 MWKDIRDREAGKLRPNSFANRVKSDRVSSLQLSNHKDIVSPHRGSVNSLQSQAHCALRVVKAHVDLTEGRYLLSGASDASAAVFDIQRASHSEGLIAKYQCLFAVDKQHEHGHKYAISSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKVPLLPSLAITLSTSKSHLASQSSNMKSRILHKKLSNGNATKPSSTTGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETVRLHTNKPLQLATSQDSALVFAPCMANIKAFDMWTGKASLTLSGHYEAVNCCLYSFQDQELYTGGNDRQILVWSPSRDSTELDWESSADKDNWSD 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3286216 3292442 - CmoCh12G005390.1 Cmo12g00539 393227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00539 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 146 - -
Cmo12g00539 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 371 IPR001680 GO:0005515
Cmo12g00539 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 449 - -
Cmo12g00539 470 Gene3D - 323 464 IPR015943 GO:0005515
Cmo12g00539 470 SUPERFAMILY WD40 repeat-like 68 454 IPR036322 GO:0005515
Cmo12g00539 470 SMART WD40_4 410 449 IPR001680 GO:0005515
Cmo12g00539 470 SMART WD40_4 42 85 IPR001680 GO:0005515
Cmo12g00539 470 SMART WD40_4 190 230 IPR001680 GO:0005515
Cmo12g00539 470 SMART WD40_4 98 143 IPR001680 GO:0005515
Cmo12g00539 470 SMART WD40_4 324 362 IPR001680 GO:0005515
Cmo12g00539 470 ProSitePatterns Trp-Asp (WD) repeats signature. 217 231 IPR019775 -
Cmo12g00539 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 449 IPR001680 GO:0005515
Cmo12g00539 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 239 IPR001680 GO:0005515
Cmo12g00539 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 232 - -
Cmo12g00539 470 ProSitePatterns Trp-Asp (WD) repeats signature. 349 363 IPR019775 -
Cmo12g00539 470 Gene3D - 1 318 IPR015943 GO:0005515
Cmo12g00539 470 MobiDBLite consensus disorder prediction 294 312 - -
Cmo12g00539 470 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Cmo12g00539 470 PRINTS G protein beta WD-40 repeat signature 130 144 IPR020472 -
Cmo12g00539 470 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Cmo12g00539 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 366 - -
Cmo12g00539 470 MobiDBLite consensus disorder prediction 294 316 - -
Cmo12g00539 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 152 IPR001680 GO:0005515
Cmo12g00539 470 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 470 IPR042238 GO:0006283
Cmo12g00539 470 Pfam WD domain, G-beta repeat 414 449 IPR001680 GO:0005515
Cmo12g00539 470 Pfam WD domain, G-beta repeat 332 362 IPR001680 GO:0005515
Cmo12g00539 470 Pfam WD domain, G-beta repeat 111 143 IPR001680 GO:0005515
Cmo12g00539 470 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00539 K10570 ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8 - csv:101209203 841.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00539 Cmo-Chr12:3286216 Cmo13g00687 Cmo-Chr13:7079839 4.36E-06 dispersed
Cmo12g00539 Cmo-Chr12:3286216 Cmo14g01011 Cmo-Chr14:5454838 2.04E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00539 Cmo_Chr12 FPKM 0.0 0.74031 119.534805 116.512444 0.687418 2.306983 2.959325 1.81477 2.273633 2.210109