Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00543 ATGGCGAAAGCACTCTACTGCCCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACTCCAGTAGTCCTAGGCGAACAGAATTTGGAAGCTGTAGCTGGGTGCAACTCCACTCTCGCTGTCAGTGAAGCCGCCCATTGGAAAATGGAGGACGCCTTTTCCAGATCTATCTCTGAGGTCTTGGGATTTTTTGGGGTTGACCCATCACAAGGTCTCACAGACGATCAGGTTTTGCATCATGCTAGAGTTTATGGAAAAAATGGTACGTTTTCTGACCCTGGTTCTAGACCGTCAGTCATTTCTATCTCCAACCAGTTTCCTCCTTTTGAAGTAGCAATTCAACTTACCCTTAAGCCTGAGCAAGAAATAGCTATTCAATTGAAGTTTACTTTGGTGATTTGGTTCCCCTGGATGGAAAGAGGGGCCCCATTTTGGAAACTGATTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTATTGGCTTTGATAAATGGAGAGACAGGCATAATAGCATTTTTGGAGCCTTCAGTAATTCTAATGATATTGGCTGCAAATGCAGCAGTAGGAGTGATTACAGAAACAAATGCCGAAAAGGCTCTTGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTATTGTCTTCTTTCCAAGTGTTTCTATTTTGTTCTTCAATGCTATTCACCGCAAGGTATCTTTTGCAGGTTGCTTTTCAATACTTCCGGCTACAGAGCTTGTTCCTGGTGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCTGCTGATATGCGAATGATTGAGATGCTTAGTAATCAGCTGCGTGTTGATCAAGCAATTCTTACAGGTGAGAGCTGCTCTGTTGAAAAAGAGCTGGAGGCCACAAGAGCAGTAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGCACCGTGGTGGTTGCTGGCAGGGCACGTGCTGTTGTGGTAGGAGTTGGTGCAAATACTGCTATGGGCAATATACGAGACTCTATATTGCAAACGGATGATGAGGTGACACCATTGAAAAAGAAGCTAGATGAATTTGGTACTTTTCTGGCCAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGAGATCCTTCTCATGGTGGGATTTTGAGTGGTGCAATACACTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCAGCGATTCCTGAAGGACTTCCTGCCGTTGTGACAACGTGTTTGGCTCTTGGCACCAAAAGAATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACGAATATGATGTCCGTCTCAAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACAACTTTCTGAGTACAATATCAGCGGTACAACATACGCTCCTGATGGTACTATTTTTGACAGCACTGGAGTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATTCTACACATGGCAATGGGCTCTGCCCTCTGCAACGAGTCTACTTTGCAGTATAATCCAGATAAGGGGAACTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCAATGCCTTTTGCTCTAAATATGCTAAGCAAGCATGAGCGCGCATCCTATTGTAACCACCATTGGGAGAACCAGTTTAAAAAGATGGACAACTTTTCAGGTTGTTGTTTTGGTCATGTTGCTTGCTTATCAAAAGAAACTTTGCAGATTTCTGTATTGGAATTTTCTCGTGATCGCAAGATGATGAGCATTTTATGTAGCAGAAACCAGTCACATATCCTTTTCTCCAAAGGTGCTCCTGAGAGCATTATTTCGAGATGCTCAAGTGTCCTTTGCAATGAAGATGGTTCTACCAGTGTTTTAACTTCTAGTATTCGTGCTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCAATCAAATTGCTTCCTGTGAGTCAACAGAGTTTATCATTTGATGATGAGCAAGACCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGTATGAATGCTGGCATACGTGTTATAGTCGTAACTGGGGACAACAAGTCAACTGCTGAATCACTCTGCCGCAAGATTGGTGCTTTTGACCATTTGGTAGATCTAGCTGATCATTCTTTTACTGCTTCTGAATTTGAAGAGCTACCTGCAATGCAACAGACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAACCTTCTCATAAGCAAATGCTTGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGTGATGGTGTCAATGATGCACCTGCACTGAAGAAAGCTGATATTGGTATTGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCATCTGATATGGTCTTAGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACTCTTGCCCCTGTGCAACTTCTTTGGGTTAACTTGGTCACTGATGGATTGCCTGCAACTGCAATTGGATTTAATAAGCAAGACTCCGATGTAATGAAATCTAAGCCTCGAAAGGTGAATGAAGCTGTGGTGACTGGATGGTTGTTCTTTCGTTATTTGGTAATTGGAGCGTATGTTGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCCGACAGTGGTCCTAAGCTACCTTACGCTGAGTTGGTAAGATTTTATTTGTTGCTGTCTTCCTATGGCATTGTGCAGTTTATTCCTGGTTTATCATATGAAGATAAGCATATGCATATGAGTTTTGATACTTGTTCAACAAGAGCGACAACATACCCTTGCAGTATATTTGAGGATCGGCATCCGTCGACTGTTTCTATGACTGTACTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGCGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATTTATGGCTCGTTGCCTCCATTGTCATAACCATGATCCTTCACATGCTTATTATGTATGTGCGACCACTAGCTGTTCTTTTCTCTGTAACGCCATTATCTTGGGCTGAATGGACGATGGTTTTGTACCTTTCGTTTCCTGTAATATTCGCACCCCTTGCCTCATTTTCTGTTGTACAATTTCAGTTTTTCTTATTCCCTCAGGATCATGGGTTGAGGCTTCCATTTAGATTCAGAAGGCATGAGTTGCTTCCAAAGAAGGAATTGCGTGACAAGTAG 3540 42.26 MAKALYCPDTDTERRKLGERMGLDTPVVLGEQNLEAVAGCNSTLAVSEAAHWKMEDAFSRSISEVLGFFGVDPSQGLTDDQVLHHARVYGKNGTFSDPGSRPSVISISNQFPPFEVAIQLTLKPEQEIAIQLKFTLVIWFPWMERGAPFWKLILKQFDDLLVKILIVAAVVSFLLALINGETGIIAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGIVFFPSVSILFFNAIHRKVSFAGCFSILPATELVPGDIVEVAVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELEATRAVNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGNIRDSILQTDDEVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGILSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYNISGTTYAPDGTIFDSTGVQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGNYEKIGESTEVALRVFAEKVGLPGFTSMPFALNMLSKHERASYCNHHWENQFKKMDNFSGCCFGHVACLSKETLQISVLEFSRDRKMMSILCSRNQSHILFSKGAPESIISRCSSVLCNEDGSTSVLTSSIRAELEARFQSFAGNEMLRCLAIAIKLLPVSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMNAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLADHSFTASEFEELPAMQQTMALQRMALFTRVEPSHKQMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKSKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDSGPKLPYAELVRFYLLLSSYGIVQFIPGLSYEDKHMHMSFDTCSTRATTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVITMILHMLIMYVRPLAVLFSVTPLSWAEWTMVLYLSFPVIFAPLASFSVVQFQFFLFPQDHGLRLPFRFRRHELLPKKELRDK 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3304011 3331634 + CmoCh12G005430.1 Cmo12g00543 393231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00543 1179 SFLD p-type atpase 449 887 IPR044492 -
Cmo12g00543 1179 SUPERFAMILY Calcium ATPase, transmembrane domain M 146 1137 IPR023298 -
Cmo12g00543 1179 PRINTS H+-transporting ATPase (proton pump) signature 866 891 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00543 1179 PRINTS H+-transporting ATPase (proton pump) signature 807 823 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00543 1179 PRINTS H+-transporting ATPase (proton pump) signature 835 851 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00543 1179 Pfam Cation transporting ATPase, C-terminus 919 1137 IPR006068 -
Cmo12g00543 1179 PANTHER CALCIUM-TRANSPORTING ATPASE 105 1137 - -
Cmo12g00543 1179 Gene3D - 465 879 IPR023214 -
Cmo12g00543 1179 PRINTS P-type cation-transporting ATPase superfamily signature 468 482 - -
Cmo12g00543 1179 PRINTS P-type cation-transporting ATPase superfamily signature 296 310 - -
Cmo12g00543 1179 PRINTS P-type cation-transporting ATPase superfamily signature 858 870 - -
Cmo12g00543 1179 PRINTS P-type cation-transporting ATPase superfamily signature 729 740 - -
Cmo12g00543 1179 PRINTS P-type cation-transporting ATPase superfamily signature 751 761 - -
Cmo12g00543 1179 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Cmo12g00543 1179 Gene3D - 478 736 IPR023299 GO:0000166
Cmo12g00543 1179 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 805 923 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00543 1179 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 261 489 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo12g00543 1179 Pfam Cation transporter/ATPase, N-terminus 145 172 IPR004014 -
Cmo12g00543 1179 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 262 989 IPR005782 GO:0005388|GO:0006816|GO:0016021
Cmo12g00543 1179 Pfam haloacid dehalogenase-like hydrolase 726 849 - -
Cmo12g00543 1179 ProSitePatterns E1-E2 ATPases phosphorylation site. 470 476 IPR018303 -
Cmo12g00543 1179 Pfam Cation transport ATPase (P-type) 538 668 - -
Cmo12g00543 1179 SUPERFAMILY Calcium ATPase, transduction domain A 251 358 IPR008250 -
Cmo12g00543 1179 Pfam E1-E2 ATPase 259 447 - -
Cmo12g00543 1179 Gene3D - 155 1137 - -
Cmo12g00543 1179 SFLD Haloacid Dehalogenase 449 887 - -
Cmo12g00543 1179 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 105 1137 - -
Cmo12g00543 1179 Gene3D - 145 360 - -
Cmo12g00543 1179 SUPERFAMILY HAD-like 466 938 IPR036412 -
Cmo12g00543 1179 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 475 733 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00604 Cmo-Chr1:3069960 Cmo12g00543 Cmo-Chr12:3304011 0 dispersed
Cmo12g00543 Cmo-Chr12:3304011 Cmo13g00152 Cmo-Chr13:940015 0 dispersed
Cmo12g00543 Cmo-Chr12:3304011 Cmo03g00953 Cmo-Chr3:7164857 8.28E-75 wgd
Cmo12g00543 Cmo-Chr12:3304011 Cmo07g00657 Cmo-Chr7:2953435 3.89E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00543 K05853 - csv:101211345 1742.24