Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00545 ATGCCGATGTACCAGCCGTCTACTTGGAGAGCAGGGAATCCCAAGCTTGTAGTAGCTTGCGGAGCGCAGATTCTAGATCTGGAAACTGTCGTCAAAGATGGGATTCTCGGCGGCGGTGGCGGCGGTGGCGGTGGCGGTGGGGAGAAGTTAGATCTGAAGGAGATGATTGTGGAGCTGGAATCGTCAATAGAGGTCCCATCGGTGTTCATTTGCCCAATTTCTCTCGAGCCGATGCAAGACCCGGTGACACTCTGTTCTGGGCAGACCTACGAGCGGTGCAACATTCAGAAATGGTTCTCTTTAGGCCATTTGACTTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCCTCACACCCAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTCGCAGAAGTTCTTCGCGTTCAAGAAGAAATCAGAGGACGTTCAGGGGAGAGTAACAGAGCTTTTGGATTCATTGAAGAAGGTCAAGGGTCAAGCTAGAGTTCAGTCCCTGAAAGATCTCCGGCATGTCGTCGCCGCCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGCGTGGCTGTAATCTCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCGGAAGCCGTGGGGATTCTCGTAAATTTGGATCTCGATTCGGAGTTAAAGAACAATTTGATTCAACCCACAAGAATATCACTAATTGCAGATATTTTAAACGAAGGCTCCATCGAAACCAAGATCAATTGCACGAAATTCATCAAGAAATTAATGGACGGTGACGATTCAAGAACAGAGAGCGTTTCAAGTTTGAGTTTACTCGTGGGATTGTTAAGAATGGTGAAGGATCAAAAACACCCAAATGGGGTAACCGCCGGACTTAGTTTACTCCGATCGCTCTGTTCAAACGAATCGATAAAGAAGCAACTGGTAAGCATCGGCGCCGTCGGGAAACTCGGCGGTGCTCTGTCCAGTTTCATCGGCGATGGGTTGGAATCAGCGCTTTACATTCTCGACGGTTTGTCGTCTCTTCCAGAGGGAAGATTAGCGTTGAAAGATTGTGAAGAAACGATTAAGAATTTGGTGAAATTATTGATGAAAGTATCTGAGATTTGTACTGAATTTGCGTTGTCAATTTTATGGGCGGTTTTCAAGGTGGCGCCGGAGGAATGCGCGGTGGTTGCGGTGGATGCAGGATTGGCGGCGAAGTTGCTGCTTGTGATACAAAGTGGGTGCAATAAAGAGGTAAAACAGAGATCATCAGAGCTATTGAAATTGTGTACTCTAAATTACCCGGATTCCATCTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1350 47.41 MPMYQPSTWRAGNPKLVVACGAQILDLETVVKDGILGGGGGGGGGGGEKLDLKEMIVELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERCNIQKWFSLGHLTCPTTMQELWDDSLTPNRTLHQLIHTWFSQKFFAFKKKSEDVQGRVTELLDSLKKVKGQARVQSLKDLRHVVAAHSSAKKMVVDNGGVAVISSLLGSFTSHAVGSEAVGILVNLDLDSELKNNLIQPTRISLIADILNEGSIETKINCTKFIKKLMDGDDSRTESVSSLSLLVGLLRMVKDQKHPNGVTAGLSLLRSLCSNESIKKQLVSIGAVGKLGGALSSFIGDGLESALYILDGLSSLPEGRLALKDCEETIKNLVKLLMKVSEICTEFALSILWAVFKVAPEECAVVAVDAGLAAKLLLVIQSGCNKEVKQRSSELLKLCTLNYPDSIFISKCKLTRTIQ 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3336364 3337713 + CmoCh12G005450.1 Cmo12g00545 393233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00545 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Cmo12g00545 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 37 448 - -
Cmo12g00545 449 PANTHER WDSAM1 PROTEIN 37 448 IPR045185 GO:0061630
Cmo12g00545 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Cmo12g00545 449 CDD RING-Ubox_PUB 69 111 IPR045210 -
Cmo12g00545 449 SUPERFAMILY RING/U-box 62 135 - -
Cmo12g00545 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Cmo12g00545 449 SUPERFAMILY ARM repeat 151 266 IPR016024 -
Cmo12g00545 449 SUPERFAMILY ARM repeat 235 437 IPR016024 -
Cmo12g00545 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Cmo12g00545 449 Gene3D - 139 446 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01834 Cmo12g00545 CCT
Cmo09g00300 Cmo12g00545 CCT
Cmo05g00134 Cmo12g00545 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00545 Cmo-Chr12:3336364 Cmo04g00519 Cmo-Chr4:2579230 3.53E-42 dispersed
Cmo01g01834 Cmo-Chr1:13404018 Cmo12g00545 Cmo-Chr12:3336364 0 wgd
Cmo12g00545 Cmo-Chr12:3336364 Cmo05g00134 Cmo-Chr5:584134 0 wgd
Cmo12g00545 Cmo-Chr12:3336364 Cmo09g00300 Cmo-Chr9:1303514 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00545 - - csv:101211594 735.332