Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00548 ATGGATTTTGGAGCGGTGGGTTTTGATGGGTTGGTGGTGGGTTCATCGGATATCTCTGGTTTCTCTTCAGATCCTGAAATGAAGCAGAAATGGTACGATTCTGCCTCTGTTTCTGGGTTTTTGCACAAACAGGAGCGATCTGGCAGTGGCGGTGTAGCTGAAATGGAGGATTTGAGAGTCTCTAAGCTCCCTAAAACGTCTGCTTCTTCTTTGCTCAGATCTAATTCCCCTTTCTTTGTCTCTGATTCTAACCAAAATCATCACCAAATGCTCTGTTTTTCATCGCCGAAAGCAGAGCCTTCTCGACTTGATAAGACAGCTTCTCTCTCAGCTGCTTCCGCTAATTTCGTCCGATCCTCCGCCCCAAGAAATGCAGGCGGCAGTTATGGAGGTTTGAACGGTGGAAGCATGCACGGCGGTGGGTTTATAGGTGTTAGAGCTCCGTTCACTCCATCTCAATGGATGGAGCTGGAACATCAGGCTTTGATCTACAAATACATTACTGCTAATGTCCATGTTCCTTCTAATTTGCTCATTCCCATCAGAAAAGCGCTTGAATCTGCTGGCATTCCGACATTTTCCGGCGGATTTCTCCGACCCACTGCCGTGGGGTGGGGAGCTTTCAACGTGGGGTTTTCAAATAACAGTGATCCTGAACCGGGAAGGTGCCGTCGGACCGACGGGAAGAAATGGCGGTGCTCAAGAGACGCAGTTGCTGACCAGAAGTACTGTGAACGGCATATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAGCCGGCCACTCCCACTCCGTCGCCGGAGCCTCCAATATTACCACCGCTGCCACCACCACCACCGCCTCTAAACTGATTTCTTCTTCTCCCCCTTCCATGACGGCGGTACCCAGCAACGCCTCCCCCAACACCATCTCTTGTGCTGGAACTCATCACTTCAAGAACCTGAACCGCGGTGGATCTCATCCGCCTCCCTCCTCTGCCACCGCCCCTCAAATCAACAGAATGCTCATAACGAACAAAGAGAATGGGGGCGTTGGGTTGCATGATTCATCTTCCATGAACATGAAACAATTCAAACAGCTTCCATTTGCCATTCACAAACAGAACCCTTTTGAAGAATCTCCAAGAACAGAGTTTACGTCTGTCTCTTCCAATTTCCTCCTCAACCCTTCACAAAAGGCTTCATCTTTGATGACTTACAGAGCTTTCAATCCTTCAGAGGGCCTCACTACTTCTCAACCAGCAGCTGAAACCCAACACTCACTCAATTGGCCTAAGAACCAATCCGATAGCTCATCGGTGTCGTGGTCGAACTGGAATCCTGATCTCCAATCCGATAGGACTCAGCTATCCATATCAATCCCAATGGCTACATCAGATTTCAGATCCTCGACGTCGTCTCCCGTTCACGAGAAACTCACTCTCTCACCGTTGAGATCTTTGCAGGAGTTCGACCCAATTCAAATGGGATTGGGAGTGGGGAATAATGTAATGGATGAGGCAAACAACAGACAGGCAAATTGGATTCCCATCTCGTGGGAGAGCTCAATGGGTGGTCCGCTTGGAGAGGTTCTTCATAGCACGAACAACAACAGCGGGGAATCGAAGAACTCGTCGATACTAAACCTGATGACCGAAGGGTGGGACATCAGTTCGTCGCCCACCGGGGTTCTGCAGAAGACTGTGTTCGGGTCTTTCTCGAACAGCAGCACAGGGAGTAGCCCAAGAACAGATAACAACAAGACTCACGAAGTAGGAGGAGGAGGCAGCCAATGCAGCGATCGTTTGGGGTCAACTTTCGTGAATTCTTCATCATCTTTGCCTAGTGGTTAA 1842 49.67 MDFGAVGFDGLVVGSSDISGFSSDPEMKQKWYDSASVSGFLHKQERSGSGGVAEMEDLRVSKLPKTSASSLLRSNSPFFVSDSNQNHHQMLCFSSPKAEPSRLDKTASLSAASANFVRSSAPRNAGGSYGGLNGGSMHGGGFIGVRAPFTPSQWMELEHQALIYKYITANVHVPSNLLIPIRKALESAGIPTFSGGFLRPTAVGWGAFNVGFSNNSDPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEGQAGHSHSVAGASNITTAATTTTASKLISSSPPSMTAVPSNASPNTISCAGTHHFKNLNRGGSHPPPSSATAPQINRMLITNKENGGVGLHDSSSMNMKQFKQLPFAIHKQNPFEESPRTEFTSVSSNFLLNPSQKASSLMTYRAFNPSEGLTTSQPAAETQHSLNWPKNQSDSSSVSWSNWNPDLQSDRTQLSISIPMATSDFRSSTSSPVHEKLTLSPLRSLQEFDPIQMGLGVGNNVMDEANNRQANWIPISWESSMGGPLGEVLHSTNNNSGESKNSSILNLMTEGWDISSSPTGVLQKTVFGSFSNSSTGSSPRTDNNKTHEVGGGGSQCSDRLGSTFVNSSSSLPSG 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3374799 3378492 + CmoCh12G005480.1 Cmo12g00548 393236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00548 613 PANTHER GROWTH-REGULATING FACTOR 9 29 586 - -
Cmo12g00548 613 MobiDBLite consensus disorder prediction 283 332 - -
Cmo12g00548 613 Pfam QLQ 148 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo12g00548 613 SMART QLQ_2 147 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo12g00548 613 MobiDBLite consensus disorder prediction 569 613 - -
Cmo12g00548 613 ProSiteProfiles QLQ domain profile. 148 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo12g00548 613 MobiDBLite consensus disorder prediction 411 443 - -
Cmo12g00548 613 MobiDBLite consensus disorder prediction 283 313 - -
Cmo12g00548 613 PANTHER - 29 586 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cmo12g00548 613 Pfam WRC 218 260 IPR014977 -
Cmo12g00548 613 ProSiteProfiles WRC domain profile. 217 261 IPR014977 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00548 - - - csv:101202772 840.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00128 Cmo12g00548 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00548 Cmo-Chr12:3374799 Cmo14g01265 Cmo-Chr14:10619218 1.90E-42 dispersed
Cmo12g00548 Cmo-Chr12:3374799 Cmo03g00937 Cmo-Chr3:7100940 1.56E-32 wgd
Cmo12g00548 Cmo-Chr12:3374799 Cmo05g00128 Cmo-Chr5:555941 0 wgd
Cmo12g00548 Cmo-Chr12:3374799 Cmo07g00639 Cmo-Chr7:2889815 7.87E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g612 Blo01g01488 Blo12g00996 Bda01g00599 Bda03g00162 Bpe02g00463 Bpe04g00144 . . Cmo05g00128 Cmo12g00548 . . . Car12g00553 . . Cpe07g00530 Bhi04g00454 Tan02g1695 . . Hepe08g1351 . . Cla08g01639 Cam08g2143 Cec08g1730 Cco08g1850 Clacu08g1831 . Cre08g1614 Cone4ag1631 Cone7ag1319 Cone17ag0901 Cone20ag0243 . . . Cme03g02123 . Blo18g00727 . Bda01g01584 Bpe02g01773 . Bma01g00682 . . . . Cma12g00612 Cma05g00124 Car05g00106 . Cpe11g00107 . . . . . . . . . . . . . . . Lsi08g01545 Csa02g01873 Chy03g01613 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001015 3 4 5 4 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 2 3 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10739 PF08879 WRC 3.40E-21 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00548 Cmo_Chr12 FPKM 6.162291 8.354431 10.068162 9.599477 5.008612 4.765682 5.729366 2.160042 1.860805 3.00446