Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00550 ATGAACAACAAGAACAAGATCAAGAACATGAACATGAACATGAACATGAAGTCGATGAATGACCATAACAATGGCTGGTTGGGCTTCTATGGGATTCCCGACTCTTCTGCTGCTGCTGCTGCTGCTATGCACCTCAAATCTGACGCCCCTCTCCGTCTCATGGGGCCTCTTTCAACATCCCAAAATCAAGGGATGGTGCCGAATTCATCACCGAAGCTCGAGGACTTTCTCGGCGGTGCAACAATGGCGGACAGGGAACATTCATTGGACCTTCAAAATCAAGAACATCACCACATTTTGATTCAAAATTCCCATCCCTACTACTCTGCTTTGGTTCCTTCCGACCCACAAATTCTTCCAATCGACGAAAACGAAATCCGTTCCCTTAGAAACTGGGTCTCTCCTCCCTACTACGCCGCCACTCCCCATAATACTCTGGAGCAGCATATTACCGGCGGTGGCGGTGGTTCTGCCTCCATTGCCGGAATGAGCTCCGGGGAACTCCAGTCATTGAGCTTATCCATGAGTCCAGGTTCTCAATCAACCTCGTTCACAGCTCCCGGCCAGATCTCTTCCACCGCCGCCGTGGAAACAAAGAAACGAGGCCCTGGGAAGCTCTGCCACAAACAACCCGTTCACCGCAAATCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGCGGAGTTACAAGACATAGATGGACAGGGAGATATGAAGCTCATCTATGGGATAATAGCTGCAAGAAAGAAGGGCAAACAAGGAAAGGAAGACAAGGAGGATATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCTGCTCTCAAATATTGGGGACCCTCCACTCATATAAATTTTCCACTGGAGAATTATCAGACTGAGCTGGAAGAGATGAAGAACATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGTAG 945 48.47 MNNKNKIKNMNMNMNMKSMNDHNNGWLGFYGIPDSSAAAAAAMHLKSDAPLRLMGPLSTSQNQGMVPNSSPKLEDFLGGATMADREHSLDLQNQEHHHILIQNSHPYYSALVPSDPQILPIDENEIRSLRNWVSPPYYAATPHNTLEQHITGGGGGSASIAGMSSGELQSLSLSMSPGSQSTSFTAPGQISSTAAVETKKRGPGKLCHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRR 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3388854 3392126 + CmoCh12G005500.1 Cmo12g00550 393238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00550 314 Gene3D AP2/ERF domain 225 291 IPR036955 GO:0003700|GO:0006355
Cmo12g00550 314 MobiDBLite consensus disorder prediction 171 196 - -
Cmo12g00550 314 ProSiteProfiles AP2/ERF domain profile. 226 289 IPR001471 GO:0003700|GO:0006355
Cmo12g00550 314 CDD AP2 225 289 IPR001471 GO:0003700|GO:0006355
Cmo12g00550 314 Pfam AP2 domain 226 281 IPR001471 GO:0003700|GO:0006355
Cmo12g00550 314 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 87 - -
Cmo12g00550 314 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 29 87 - -
Cmo12g00550 314 SUPERFAMILY DNA-binding domain 225 291 IPR016177 GO:0003677
Cmo12g00550 314 MobiDBLite consensus disorder prediction 171 210 - -
Cmo12g00550 314 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 114 314 - -
Cmo12g00550 314 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 114 314 - -
Cmo12g00550 314 SMART rav1_2 226 295 IPR001471 GO:0003700|GO:0006355
Cmo12g00550 314 PRINTS Ethylene responsive element binding protein signature 271 291 IPR001471 GO:0003700|GO:0006355
Cmo12g00550 314 PRINTS Ethylene responsive element binding protein signature 227 238 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01825 Cmo12g00550 CCT
Cmo09g00310 Cmo12g00550 CCT
Cmo05g00125 Cmo12g00550 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00550 Cmo-Chr12:3388854 Cmo12g01004 Cmo-Chr12:9385816 5.63E-06 dispersed
Cmo12g00550 Cmo-Chr12:3388854 Cmo03g00934 Cmo-Chr3:7088777 5.17E-07 wgd
Cmo12g00550 Cmo-Chr12:3388854 Cmo05g00125 Cmo-Chr5:542544 5.71E-07 wgd
Cmo12g00550 Cmo-Chr12:3388854 Cmo07g00637 Cmo-Chr7:2876799 3.96E-07 wgd
Cmo12g00550 Cmo-Chr12:3388854 Cmo09g00310 Cmo-Chr9:1336180 7.39E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10740 PF00847 AP2 1.60E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00550 K09285 - csv:101212797 404.06