Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00551 ATGGCTAATTGGTGGAGAAAAGAGAGCCATAAAGGAACCCCTGTTGTTGTAAAGATGGAGAATCCCAACTGGTCAATGGTTGAACTTCAAGGCCCTTCCGATGATGACTTCATTATCGCCGCCGAGTCGCCGCCGGGTAGAATCAGAGAGAAAGGACGAGGAAAAAACGCCAAGCAACTCACTTGGGTTCTTCTTCTTAAAGCTCATAAGGCTGCCGATTGTTTAACCTCCATTGGCTCAGCATTGGTTAACATCGGCGCTGCTGTTAAACGCCGTGTTGCTTCCGGTAAAACCGATGCCGACCTCGACAACGACAATGACAACGCCGACAGCGGCGAGAGGGAAAACCCAACTGTCAAAACCAGGTTTTATTTGTTTATTAAGATTTTCCTTTGGGTGTCGGTGGGTCTATTAGGGTTTGAAGTGGCGGCGTATTACAAGGGCTGGCATTTTAGGGCACCCCATCTTGAATTGAACTACTTCTGGACATACCCATTTGGGGTTAAGGATGTTTTTGATTGGATTTACTCGAAATGGGTTGTGATTCGTGTGGATTATTTTGCTCCTCCTCTCCAGTTTTTGGCCAATGTTTGTATAGTGTTGTTCCTCATTCAAACTCTGGATAGGTTGATTCTTTGTTTGGGTTGTTTCTGGATCCGCTTCAAGAAAATCAAACCAGTTCCGAATGCTTCGGCCTTCGATCTTGAATCTGGAGAGACTGGTTACTTCCCTATGGTTCTTGTTCAGATCCCAATGTGCAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTAGACTGGCCAAAAGACAAGTTACTGATTCAGGTTCTCGACGACTCGGATGATCCAATCACCGTATTGCTGATCCAAGAGGAGGTTCGTAAATGGCAGCAACTCGATGCCAACATCGTGTACCGACATAGAGTGATTCGAGAGGGGTATAAGGCAGGCAATCTCAAGTCTGCCATGAGTTGCAGCTATGTCAAAGACTATGAATTTGTTGCTATCTTTGATGCTGATTTTCAGCCTGCCTCTGATTTCCTTAAAAGAACACTTCCTCATTTTAAGGATAATGAGGAACTTGGACTTGTTCAAGCGCGGTGGTCGTTCGTAAACAAGGACGAGAACTTGTTAACCCGACTGCAGAACATTAACTTAGCCTTCCATTTCGAGGTGGAGCAACAGGTTAATGGAGTTTTTCTTAATTTCTTTGGATTCAATGGCACTGCTGGTGTTTGGAGGATTAAGGCTCTTGAAGAAGCCGGTGGATGGCTGGAAAGAACCACGGTTGAGGACATGGACATTGCGGTTCGTGCTCATCTTCATGGCTGGAAATTCATATTCCTCAACGATGTAGAGTGCCAATGTGAATTACCCGAATCGTATGAAGCGTATAGAAAACAGCAGCACCGATGGCATTCTGGACCGATGCAATTGTTTCGTCTTTGTTTGCCTGATATCGTTCGATCAAAGATTGGCATATGGAAGAAATTCAACTTGATCTTCCTGTTCTTTCTGCTACGAAAGCTGATATTACCGTTTTATTCGTTTACACTCTTCTGCATTATTCTTCCAATGACAATGTTCGTTCCCGAAGCCGTGTTACCTGCGTGGGTCGTATGTTACATTCCAGCCACCATGTCTTTTCTCAACATTCTTCCAGCACCAAAGTTCTTCCCTTTCATTGTCCCTTACCTCCTTTTCGAGAACACAATGTCAGTAACAAAGTTCAATGCAATGGTTTCGGGACTTTTTCAACTCGGCAGTGCATACGAATGGGTCGTTACGAAGAAATCAGGTCGATCCTCCGAGGGTGATCTCGTCTCGATGGTCGGGAAAAAAGAGTTGAACACTGAAAAGAGTGCATCAGCTAACAACCTTGAGGAGATTGAGTTAATACAAAAACAGGACAACAATTTGTCGAAGAAGAAGCATAATAGAATATACATGAAGGAACTAGCATTGGCTTTCCTTCTCCTAACAGCCTCAGCTAGAAGCCTTCTCTCAGCTCAAGGGATTCATTTCTACTTCTTGATGTTTCAAGGAATATCCTTTCTCCTCGTCGGTCTCGACTTGATCGGCGAGCAGGTTGTTTGA 2109 44.33 MANWWRKESHKGTPVVVKMENPNWSMVELQGPSDDDFIIAAESPPGRIREKGRGKNAKQLTWVLLLKAHKAADCLTSIGSALVNIGAAVKRRVASGKTDADLDNDNDNADSGERENPTVKTRFYLFIKIFLWVSVGLLGFEVAAYYKGWHFRAPHLELNYFWTYPFGVKDVFDWIYSKWVVIRVDYFAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPNASAFDLESGETGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITVLLIQEEVRKWQQLDANIVYRHRVIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPASDFLKRTLPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGIWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAVLPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLVSMVGKKELNTEKSASANNLEEIELIQKQDNNLSKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLMFQGISFLLVGLDLIGEQVV 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3402529 3405753 - CmoCh12G005510.1 Cmo12g00551 393239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00551 702 PANTHER - 8 701 - -
Cmo12g00551 702 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 8 701 - -
Cmo12g00551 702 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 237 461 IPR029044 -
Cmo12g00551 702 Pfam Glycosyl transferase family group 2 338 543 IPR001173 -
Cmo12g00551 702 SUPERFAMILY Nucleotide-diphospho-sugar transferases 246 539 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00551 - - - csv:101203245 1263.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01821 Cmo12g00551 CCT
Cmo09g00311 Cmo12g00551 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00551 Cmo-Chr12:3402529 Cmo15g00330 Cmo-Chr15:1534075 0 dispersed
Cmo01g01821 Cmo-Chr1:13352801 Cmo12g00551 Cmo-Chr12:3402529 0 wgd
Cmo12g00551 Cmo-Chr12:3402529 Cmo09g00311 Cmo-Chr9:1348139 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g605 Blo01g01484 Blo12g00794 Bda01g00601 Bda03g00159 Bpe02g00467 Bpe04g00141 . Bma01g02228 . Cmo12g00551 Cma01g01758 Cma09g00311 Car01g01374 Car12g00556 Sed10g1150 Cpe06g00220 Cpe07g00533 Bhi04g00461 Tan02g1687 Cmetu03g1896 . Hepe08g1357 . Lcy13g2156 Cla08g01643 Cam08g2147 Cec08g1735 Cco08g1854 Clacu08g1835 . Cre08g1618 Cone4ag1635 Cone7ag1317 Cone17ag0903 Cone20ag0246 Lsi04g01454 Csa04g02506 . Cme03g02127 . . . . . . . . Sed11g1870 Cmo01g01821 Cmo09g00311 Cma12g00615 . . Car09g00263 . Cpe02g00240 Bhi09g03190 Tan01g4659 Cmetu07g2267 . Hepe01g1852 Mch11g0387 . . . . . . . . Lsi08g01551 Csa02g01868 Chy07g00213 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g00432 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 1.1e-57 220.7
Cmo20g00891 CST 220 381 REM Transcription Factor Family AT1G49480 71.6 1.1e-57 220.7
Cmo01g01628 . 1 714 REM Transcription Factor Family AT2G24630 75.8 0.0e+00 1083.6
Cmo09g00524 . 1 702 REM Transcription Factor Family AT2G24630 75.4 5.4e-313 1070.5
Cmo15g00330 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 2.2e-266 915.6
Cmo04g02854 CST 4 662 REM Transcription Factor Family AT2G24630 69.4 2.8e-266 915.2
Cmo01g01821 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 4.5e-264 907.9
Cmo09g00311 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.3 1.7e-263 906.0
Cmo12g00551 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 3.1e-257 885.2
Cmo17g01263 . 5 630 REM Transcription Factor Family AT2G24630 54.6 8.4e-202 701.0
Cmo08g00242 . 5 439 REM Transcription Factor Family AT2G24630 50.5 1.3e-125 448.0
Cmo01g01628 . 1 714 REM Transcription Factor Family AT2G24630 75.8 0.0e+00 1083.6
Cmo09g00524 . 1 702 REM Transcription Factor Family AT2G24630 75.4 5.4e-313 1070.5
Cmo15g00330 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 2.2e-266 915.6
Cmo04g02854 CST 4 662 REM Transcription Factor Family AT2G24630 69.4 2.8e-266 915.2
Cmo01g01821 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 4.5e-264 907.9
Cmo09g00311 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.3 1.7e-263 906.0
Cmo12g00551 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 3.1e-257 885.2
Cmo17g01263 . 5 630 REM Transcription Factor Family AT2G24630 54.6 8.4e-202 701.0
Cmo08g00242 . 5 439 REM Transcription Factor Family AT2G24630 50.5 1.3e-125 448.0
Cmo01g01628 . 1 714 REM Transcription Factor Family AT2G24630 75.8 0.0e+00 1083.6
Cmo09g00524 . 1 702 REM Transcription Factor Family AT2G24630 75.4 5.4e-313 1070.5
Cmo15g00330 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 2.2e-266 915.6
Cmo04g02854 CST 4 662 REM Transcription Factor Family AT2G24630 69.4 2.8e-266 915.2
Cmo01g01821 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 4.5e-264 907.9
Cmo09g00311 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.3 1.7e-263 906.0
Cmo12g00551 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 3.1e-257 885.2
Cmo17g01263 . 5 630 REM Transcription Factor Family AT2G24630 54.6 8.4e-202 701.0
Cmo08g00242 . 5 439 REM Transcription Factor Family AT2G24630 50.5 1.3e-125 448.0
Cmo02g00432 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 1.1e-57 220.7
Cmo20g00891 CST 220 381 REM Transcription Factor Family AT1G49480 71.6 1.1e-57 220.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002112 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 3 2 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00551 Cmo_Chr12 FPKM 2.571558 2.345659 9.05911 9.233624 81.915131 81.661423 87.471947 14.452524 14.013046 16.550173