Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00554 ATGAGCGATGACAATGGCAAATCGGATAAGGATAATCAATGGCAATCGCCAAGAGCATCGCATCAACAGAAAGAGGAGGAGGATACGAAACTCTGGGGAATTCTTCTCTTCGGTTTGATCGGTGCCTCTGCCACCACTCTTGCCGTTAGTCATCTGCGGAGAACTGTTGATTGGGTATACACTCAGGTATATGCGTCAAAATCATCATGGAGTGGAGGAAATGGCCGTTCTTTCCGGTCATCGTTTCAGGAGGATGCATGGAAAAGGTATAATCGTAGGCTGCAAGAGGAGTATGAAGAAGAAATGGAGAGGGTGGAGCGCATAAGGCGCATGCAGAATGTATTCAACCGAGAGAGGAACAAATACAAGAGAGGTTATGAAAGCTGGAGAGAGAATGATCCTGGTGCATATCATCAGCATCACCAGCGAGATGATTGGTATTGGAAGGCCGAGACATTTTACAGAGAGCAACAAAGTAATAATCATAGGGGAACTCCAAGAGTCAGAACAAGTTACTTGTTATCTCATCATTACACAGTTTTGGGTCTCGACAGGTGTCGAAAAACACCTTACACAGATGCTGAGATTAAGACAGCATTCCAATCCAAGGCGAAGCAGTTTCATCCAGATCAGAACCAGGATAATAAAGAGGCTGCTGAGGCCAAGTTCAAAGAGGTGATGACATCTTACGACGCCATAAAGTTAGAAAGAAAGAGCAGTAGAGCGTAA 729 44.86 MSDDNGKSDKDNQWQSPRASHQQKEEEDTKLWGILLFGLIGASATTLAVSHLRRTVDWVYTQVYASKSSWSGGNGRSFRSSFQEDAWKRYNRRLQEEYEEEMERVERIRRMQNVFNRERNKYKRGYESWRENDPGAYHQHHQRDDWYWKAETFYREQQSNNHRGTPRVRTSYLLSHHYTVLGLDRCRKTPYTDAEIKTAFQSKAKQFHPDQNQDNKEAAEAKFKEVMTSYDAIKLERKSSRA 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3413126 3416885 - CmoCh12G005540.1 Cmo12g00554 393242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00554 242 Coils Coil 91 111 - -
Cmo12g00554 242 Gene3D DnaJ domain 174 242 IPR036869 -
Cmo12g00554 242 CDD DnaJ 177 226 IPR001623 -
Cmo12g00554 242 SMART dnaj_3 175 238 IPR001623 -
Cmo12g00554 242 MobiDBLite consensus disorder prediction 1 26 - -
Cmo12g00554 242 SUPERFAMILY Chaperone J-domain 170 234 IPR036869 -
Cmo12g00554 242 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 240 - -
Cmo12g00554 242 PRINTS DnaJ domain signature 218 238 IPR001623 -
Cmo12g00554 242 PRINTS DnaJ domain signature 200 215 IPR001623 -
Cmo12g00554 242 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 240 - -
Cmo12g00554 242 Pfam DnaJ domain 177 238 IPR001623 -
Cmo12g00554 242 ProSiteProfiles dnaJ domain profile. 176 242 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00554 - - - csv:101213280 414.846
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00122 Cmo12g00554 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00554 Cmo-Chr12:3413126 Cmo07g00977 Cmo-Chr7:4801596 1.26E-06 dispersed
Cmo12g00554 Cmo-Chr12:3413126 Cmo05g00122 Cmo-Chr5:526767 4.24E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g601 . Blo12g01002 . Bda03g00156 . Bpe04g00138 . . Cmo05g00122 Cmo12g00554 . . . Car12g00558 . . Cpe07g00535 Bhi04g00466 . . . . . Lcy13g2158 Cla08g01645 . . . . . Cre08g1620 . Cone7ag1314 Cone17ag0906 Cone20ag0249 . . . Cme03g02129 . . . . . . . . . . . Cma12g00617 Cma05g00120 Car05g00102 . Cpe11g00104 . . . . . . . . . . . . . . . Lsi08g01553 Csa02g01866 Chy03g01619 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007061 3 2 2 0 2 0 2 0 0 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00554 Cmo_Chr12 FPKM 18.278387 18.7637 23.141459 21.415764 12.749807 11.512714 12.697065 9.922688 11.825374 11.447569