Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00559 ATGGAAGATCAGTACAACCCTAATTTTCATTATCATCATCATCAAGAACAGCAACAACAAGTTCATGATTTTCAAATAAGTAGCGGTGGGAGTAAGGATATTGATGTTATGAAGGCCAAAATCATCTCCCACTCTCAATTCTCTAATCTCCTCCAAGCTTTCTTGGATTGCAAAAAGGTGGGAGCTCCGGCGGAGGTGGCGGCGGAACTTGGGTCGGTAGGGGAGGAGTTTGAGGAGCGGCGGCGGTGTTCAATGGCGGCGAGTGGGGGTTGTAGTGATCCAGAACTTGATCAGTTCATGGAAGGTTACTATAGGATGTTGGTGAAGTATAGAGAGGAGCTGACGAAGCCTATTCAAGAAGCTTCTGATTTCATGGAGAGAGTTGAATCTCAGCTCAATACTCTCTATGCAGCGACAGAAAATCGCGACGGAATGGGATCATCGGAGGAGGAGCAAGAGAAGGGCGGGGAAGGCGGAAGAGATGCAACGGAACAGATCGACCCACGAGCAGACGAGCGAGAGCTAAAGAATCACTTACTAAAGAAGTACAGTGGGTATCTGAGCACTCTAAAGCAAGAGCTTTCAAAGAAGAAGAAGAAAGGAAAGCTCCCAAAAGACGCAAGGCAGGAGCTGCTGAGATGGTGGGAAGTGCACAGCAAATGGCCATACCCATCGGAGGCAGAGAAGTTGGCGCTAGCGGAATCAACTGGGTTGGATCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCATTGGAAGCCGTCTGAGGATGTACAGTTGATGGGTATGGAGGGGTTTTACCATCCCAACACTGCTGCTGCTGCTGCTGCTTTTTACTTCGATGGGCATTACATGGGCGATGCCCATTACCGTTTGGGTCCATGA 894 48.1 MEDQYNPNFHYHHHQEQQQQVHDFQISSGGSKDIDVMKAKIISHSQFSNLLQAFLDCKKVGAPAEVAAELGSVGEEFEERRRCSMAASGGCSDPELDQFMEGYYRMLVKYREELTKPIQEASDFMERVESQLNTLYAATENRDGMGSSEEEQEKGGEGGRDATEQIDPRADERELKNHLLKKYSGYLSTLKQELSKKKKKGKLPKDARQELLRWWEVHSKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQLMGMEGFYHPNTAAAAAAFYFDGHYMGDAHYRLGP 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3457585 3461644 - CmoCh12G005590.1 Cmo12g00559 393247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00559 297 CDD homeodomain 206 258 IPR001356 GO:0003677
Cmo12g00559 297 ProSiteProfiles 'Homeobox' domain profile. 194 257 IPR001356 GO:0003677
Cmo12g00559 297 SMART KNOX1_2 35 79 IPR005540 GO:0003677|GO:0005634
Cmo12g00559 297 SMART KNOX2_2 86 137 IPR005541 GO:0003677|GO:0005634
Cmo12g00559 297 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 288 - -
Cmo12g00559 297 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 12 288 - -
Cmo12g00559 297 SMART ELK_2 174 195 IPR005539 GO:0003677
Cmo12g00559 297 SMART ELK_2 95 115 IPR005539 GO:0003677
Cmo12g00559 297 ProSitePatterns 'Homeobox' domain signature. 232 255 IPR017970 GO:0000981|GO:0006355
Cmo12g00559 297 MobiDBLite consensus disorder prediction 138 171 - -
Cmo12g00559 297 Pfam KNOX1 domain 37 78 IPR005540 GO:0003677|GO:0005634
Cmo12g00559 297 MobiDBLite consensus disorder prediction 144 171 - -
Cmo12g00559 297 Pfam ELK domain 174 195 IPR005539 GO:0003677
Cmo12g00559 297 Pfam Homeobox KN domain 214 253 IPR008422 GO:0003677|GO:0006355
Cmo12g00559 297 SMART HOX_1 196 261 IPR001356 GO:0003677
Cmo12g00559 297 Gene3D - 191 264 - -
Cmo12g00559 297 SUPERFAMILY Homeodomain-like 195 266 IPR009057 -
Cmo12g00559 297 Pfam KNOX2 domain 91 135 IPR005541 GO:0003677|GO:0005634
Cmo12g00559 297 ProSiteProfiles ELK domain profile. 174 194 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01817 Cmo12g00559 CCT
Cmo09g00320 Cmo12g00559 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00119 Cmo-Chr5:501389 Cmo12g00559 Cmo-Chr12:3457585 4.04E-101 dispersed
Cmo12g00559 Cmo-Chr12:3457585 Cmo04g01834 Cmo-Chr4:9211224 1.77E-71 dispersed
Cmo01g01817 Cmo-Chr1:13322815 Cmo12g00559 Cmo-Chr12:3457585 3.54E-111 wgd
Cmo12g00559 Cmo-Chr12:3457585 Cmo09g00320 Cmo-Chr9:1391789 6.40E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10742 PF03791 KNOX2 9.80E-22 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00559 - - cpep:111798143 540.806