Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00560 ATGATCACTGAATCAATGCTTCTCAATCCATCCGCCCATTTTTCATCCTGGGACTCCCTCGACGATCCCACCGCCGCCGCAATCTCCTCCTATCTCACTGCCGGTCACGTGTCGCCGCTCGATTCGCCCACGAGAGCGGTCATGGAGTTCGATTCGTCATTCTGGGAGGAACAGGAACTGCCGGCGGCGGTGGACGCGTTCACCTGCGACGATTTTCGTATGTACGAGTTCAAAGTTCGCTCGTGCGCACGTGGGAGGTCCCACGATTGGACTAAATGTCCGTACGCTCACGTCGGCGAGAAGGCTCGCCGCCGTGATCCGAGGAAGTTCAACTATTCTGGTACTGAATGCCCTGCTTTACGCCATGGGTGTTGTAAGAAAGGGGACGCCTGTGAGTTCGCTCATGGTACATTCGAAATTTGGCTCCACCCAGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGCCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACGTTGGAGCAACTCCGGATTCCGGCGAAACAGAGCCTCATGTCTCCACGGGCGGCTAAGGAAATCGCCTCTGCTGTAACATCGCCGACGTCGATCCTAATCTCGCCGGATTCGCCTCCAATGTCTCCGATCAGCCCTGTAACCACCGGCGGCGAATCGTTCAGCAGATTAGTCCCACTGATGCACAATCTCCAGCTTGACAAATCAAAGAAAAACCCAGCCGTCTCCGGCTTCGATTCAAGCCCCCGGCGGAACTCCGGCGGGTTCGATCTGTGGGACAGAACTTTCGAAGAAGAACCGGCAATGGAGAGAGTGGAATCTGGAAGAAACCTCCGTGCCCAAATGTACGCCAAATTAATGAGAGAGAATTCGGTGGACAGAATCCGGCCACTGATATCGGCCGGATCTCAAAGCTAA 918 55.99 MITESMLLNPSAHFSSWDSLDDPTAAAISSYLTAGHVSPLDSPTRAVMEFDSSFWEEQELPAAVDAFTCDDFRMYEFKVRSCARGRSHDWTKCPYAHVGEKARRRDPRKFNYSGTECPALRHGCCKKGDACEFAHGTFEIWLHPDRYRTQPCRDGIACRRRVCFFAHTLEQLRIPAKQSLMSPRAAKEIASAVTSPTSILISPDSPPMSPISPVTTGGESFSRLVPLMHNLQLDKSKKNPAVSGFDSSPRRNSGGFDLWDRTFEEEPAMERVESGRNLRAQMYAKLMRENSVDRIRPLISAGSQS 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3468989 3469906 + CmoCh12G005600.1 Cmo12g00560 393248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00560 305 ProSiteProfiles Zinc finger C3H1-type profile. 111 138 IPR000571 GO:0046872
Cmo12g00560 305 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 10 244 - -
Cmo12g00560 305 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 250 301 - -
Cmo12g00560 305 Gene3D - 108 180 - -
Cmo12g00560 305 PANTHER UNKEMPT FAMILY MEMBER 250 301 IPR045234 -
Cmo12g00560 305 PANTHER UNKEMPT FAMILY MEMBER 10 244 IPR045234 -
Cmo12g00560 305 SMART c3hfinal6 111 137 IPR000571 GO:0046872
Cmo12g00560 305 SMART c3hfinal6 146 169 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00560 Cmo-Chr12:3468989 Cmo12g01319 Cmo-Chr12:11538984 1.43E-74 dispersed
Cmo01g01815 Cmo-Chr1:13306877 Cmo12g00560 Cmo-Chr12:3468989 1.66E-98 wgd
Cmo10g00717 Cmo-Chr10:3287572 Cmo12g00560 Cmo-Chr12:3468989 1.49E-78 wgd
Cmo11g00683 Cmo-Chr11:3277711 Cmo12g00560 Cmo-Chr12:3468989 4.78E-81 wgd
Cmo12g00560 Cmo-Chr12:3468989 Cmo05g00118 Cmo-Chr5:495566 7.50E-166 wgd
Cmo12g00560 Cmo-Chr12:3468989 Cmo09g00324 Cmo-Chr9:1409001 1.30E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10743 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00560 - - cpep:111798847 605.134