Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00561 ATGAGCAGCACCGAGACCTCACTGCCACAAACAATCTCAAACTCTGCTGGTTTTGACTCTGTTGCTCAGTTTCAGACTCCTAATGTCTCCCCTTCAAGCTTCTCCGACATGGTTCCCGGCGGCAGTGGTTATGGTAGAGATGAATGGGGTTTAATGGAAGATTGGGGCTGTGACTTCTCACCCGACATGATCTGCAGCATATTTCGCAGATCTGCCATGGATTTCATGAAGGTTTTCGATCAAACTGTCCGTGAAATAAAGAGGGAGGTGAATTTGAAGGTCTTGAAGGTTCCGGAAATCGAACAGAAGGTGCTAGATGCAACAGATGATGAACCATGGGGTCCTCATGGATCCGCACTGGCAGAAATAGCGCAAGCTACAAAGAAATTTTCTGAAACTCAGATGGTTATGAGTGTTCTCTGGACAAGATTGAGTGAAACTGGTAAGAATTGGCGTCTTGTCTACAAGGCTTTGGCTGTAATAGAATATTTGGTGTCGCATGGATCTGAACGTGCCGTGGATGACATTATTGAACATACTTTCCAGATATCTTCACTCTCGAATTTTGAATATGTTGAGCCAAGTGGCAAGGACATGGGGATAAATGTCAGGAAGAAGGCTGAAACTATTGTTGCCCTTTTGAATGATAAAGATAAAATACAAGAAGTGAGAAATAAAGCTGCTGCAAATCGTGAAAAGTACTTTGGACTTTCATCTACTGGGATCACTTACAAGTCAGGCTCAGCCTCGTATGGCAGCAGTAGCTTTAGCAGTGATAGTTATCAAGGTCAGAGTAGCTTTAGAAGCGATAGATTTCGTGATAGGAGCAGCGACAGGGATTCATTTAGGAAGGAAAAAGAAGATCAGGATGACTTTAAAAGGTCAAATTGGTCTACTAAGCAGGATTATAGCAAGGGTTCTGCACAAAACAGCAGGTATGTTTCGTTTGGACTCTGTGATATATTGAAGAATTATATTACTGGAGAAGTCAAGGATCAAAGTAAAACATCATCGGGAACATCGAAGTTCTCAAAAAAGTCAAATGACTCTGCAAATAAGGGTGTCTCCTTCAGTTCTAGTCCCCAAACAAATAATTCTGACGAAGATTTTGATGATTTTGATCCTCGTGGGAATTCCACCACCACCACCACAAAAGCTGCTGTACCAAGCCCCAATGGAGTGGATCTTTTTGAAGATAGTTTAATTGGAGATCTCATGGATGCTCCAACACTTGTTCCTCCTGGAAAGCCTGACAGCGATTCTCCGGAGGTAGATCTGTTTGCAGATGCTACTTTTGTATCAGCTTCACCGCCAATGGAAAAGGAACCCAATTCCTCGCTAAAGGTTCTGGATACTTCAGTATTTTTAGCGGTTTTATTAAATTCCCCAATTAATACATGCTCCTGTATTTTGTTTACTGCAATCACTGTTTTGCATTTAGCCAAGTTAGAGATTTACCTTTTGATTCAAGAATAA 1476 41.8 MSSTETSLPQTISNSAGFDSVAQFQTPNVSPSSFSDMVPGGSGYGRDEWGLMEDWGCDFSPDMICSIFRRSAMDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDDEPWGPHGSALAEIAQATKKFSETQMVMSVLWTRLSETGKNWRLVYKALAVIEYLVSHGSERAVDDIIEHTFQISSLSNFEYVEPSGKDMGINVRKKAETIVALLNDKDKIQEVRNKAAANREKYFGLSSTGITYKSGSASYGSSSFSSDSYQGQSSFRSDRFRDRSSDRDSFRKEKEDQDDFKRSNWSTKQDYSKGSAQNSRYVSFGLCDILKNYITGEVKDQSKTSSGTSKFSKKSNDSANKGVSFSSSPQTNNSDEDFDDFDPRGNSTTTTTKAAVPSPNGVDLFEDSLIGDLMDAPTLVPPGKPDSDSPEVDLFADATFVSASPPMEKEPNSSLKVLDTSVFLAVLLNSPINTCSCILFTAITVLHLAKLEIYLLIQE 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3472935 3483349 + CmoCh12G005610.1 Cmo12g00561 393249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00561 491 SMART enth_2 98 224 IPR013809 -
Cmo12g00561 491 Gene3D - 96 235 IPR008942 -
Cmo12g00561 491 CDD ENTH 100 216 - -
Cmo12g00561 491 MobiDBLite consensus disorder prediction 268 298 - -
Cmo12g00561 491 Pfam ENTH domain 99 219 IPR013809 -
Cmo12g00561 491 ProSiteProfiles ENTH domain profile. 92 224 IPR013809 -
Cmo12g00561 491 MobiDBLite consensus disorder prediction 251 267 - -
Cmo12g00561 491 MobiDBLite consensus disorder prediction 251 304 - -
Cmo12g00561 491 MobiDBLite consensus disorder prediction 331 366 - -
Cmo12g00561 491 MobiDBLite consensus disorder prediction 331 393 - -
Cmo12g00561 491 PANTHER CLATHRIN INTERACTOR EPSIN 1 73 447 IPR033521 GO:0006623|GO:0030276
Cmo12g00561 491 PANTHER EPSIN/ENT-RELATED 73 447 - -
Cmo12g00561 491 SUPERFAMILY ENTH/VHS domain 79 224 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00561 K12471 EPN; epsin - csv:101214728 547.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00117 Cmo12g00561 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00561 Cmo-Chr12:3472935 Cmo14g01533 Cmo-Chr14:12247970 3.19E-72 dispersed
Cmo01g00623 Cmo-Chr1:3217385 Cmo12g00561 Cmo-Chr12:3472935 1.62E-12 transposed
Cmo12g00561 Cmo-Chr12:3472935 Cmo05g00117 Cmo-Chr5:488092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g46 . . . . . . . . Cmo05g00117 Cmo12g00561 . Cma05g00111 . Car12g00571 . Cpe07g00544 . Bhi04g00480 . . . Hepe08g1372 . Lcy13g2167 . . . . . . . Cone4ag1645 Cone7ag1303 . . . . . . . . . . . . . . . . . . Cma12g00623 . Car05g00096 Cpe11g00091 . . . . . . . . . . . . . . . Lsi08g01563 Csa02g01858 Chy03g01627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006203 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00561 Cmo_Chr12 FPKM 8.12253 10.775889 14.779329 13.984045 10.419012 9.795523 11.26181 3.461342 3.8364 4.242197