Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00572 ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACATGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAG 987 48.02 MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSDLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSEVRLQILVPLRLLCPFVVGTNA 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3523915 3530367 - CmoCh12G005720.1 Cmo12g00572 393260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00572 328 CDD KH-I 238 301 - -
Cmo12g00572 328 ProSiteProfiles Type-1 KH domain profile. 141 208 - -
Cmo12g00572 328 Coils Coil 287 307 - -
Cmo12g00572 328 CDD KH-I 143 208 - -
Cmo12g00572 328 MobiDBLite consensus disorder prediction 44 58 - -
Cmo12g00572 328 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 87 309 - -
Cmo12g00572 328 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 144 219 IPR036612 GO:0003723
Cmo12g00572 328 SMART kh_6 140 213 IPR004087 GO:0003676
Cmo12g00572 328 SMART kh_6 232 306 IPR004087 GO:0003676
Cmo12g00572 328 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 87 309 - -
Cmo12g00572 328 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 233 308 IPR036612 GO:0003723
Cmo12g00572 328 Pfam KH domain 145 210 IPR004088 GO:0003723
Cmo12g00572 328 Pfam KH domain 237 303 IPR004088 GO:0003723
Cmo12g00572 328 MobiDBLite consensus disorder prediction 1 61 - -
Cmo12g00572 328 Gene3D K Homology domain, type 1 138 229 IPR036612 GO:0003723
Cmo12g00572 328 Gene3D K Homology domain, type 1 230 312 IPR036612 GO:0003723
Cmo12g00572 328 ProSiteProfiles Type-1 KH domain profile. 233 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00572 K13210 FUBP; far upstream element-binding protein - csv:101216803 526.939
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00109 Cmo12g00572 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01340 Cmo-Chr11:9282118 Cmo12g00572 Cmo-Chr12:3523915 5.09E-86 dispersed
Cmo12g00572 Cmo-Chr12:3523915 Cmo19g00642 Cmo-Chr19:6945991 7.97E-82 dispersed
Cmo12g00572 Cmo-Chr12:3523915 Cmo05g00109 Cmo-Chr5:442455 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00572 Cmo_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.26321 0.168178 0.07365
Cmo12g00572 Cmo_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.26321 0.168178 0.056849
Cmo12g00572 Cmo_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.282027 0.152788 0.07365
Cmo12g00572 Cmo_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.282027 0.168178 0.056849