Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00574 ATGGCCAGTACAAATTCTGTCATTGTAGGTGAGATTCTGCCTCTTCGCACTCCAATTGCAGCTGGATTTCCTATCCTTTTGACTCTGCGGGAATCTGGATGCCCTGCTACTGATGCAGATGATCATATAGTTGATCAATTGGGGTTCTTAGGCTCTTCTCCAATGGCCACTGCCCCGCCACGGAACGATATGGGGGATGTTTCCGGAGGTTGTTTGAATCTCTCTGGTAATGCTGAGTTTCAAGATCAGCTAGCAGGAGCAATTCCTATTGCTTCTGTTTCTCCAGTGAATGCAAAAGATTCAGCATTTTCAACCCCTCAGTTCCATCAGTTAGGGACTTTTAGAACTCGCTTCGAACACAGTTCCTCTAATGCTTCAAACTCTTCATTTGCAAGTTCTCTAAACTGTGAAGGTGACGAGTCTCTATGTAATGCAAATAACGAGTGGGAAAACGGTCATTTTCCTTATAATCAGCCAATTGCTAGGGGTAATCCAGTAAGATCAGATTTCCAGACCATTTCATCGATGGAAAACTTGGTTCAGAATGGCTGGATGCCATCCAACACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTGAGTCTTGCCACATCCAAACCTGTGATCGTTGGAGGAACCAATTTCCTGGACCAGTATTCACAGCTGACTTTTTCTGGTGCTACTCAGCCTTGCTTGAACAACACAGAATTAGCCTGCAACTCCATGGACCTCTCTCTAAGTTACAATTATGGTAGTCCTGTTCATCCCTCTCAAGCAATATCAGGATCAAGATATCTTTCCGTCATTCAAGACATACTTTCCCAAATTGCAAGCTATCCACTGGAAAGTTCAGATCAAGTTAGCCATTCATCAACCACAGTTGGATTTGTGCCATTCTCATCAAGTTCCCTGGAGACTCAATGGCCGAAACCATCTGGTGATGCCAAGAGATCCCATCTGTTGACTTTACAACAACTGATTGATGAGAGGTACACTCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCTGCCACCGATTTGGATCCTCGCTTGCATTTTCATTATACTTACCAGACAATCACTTCTGTGTATAAAAGCCTGAGGGAGAAGATTACTAATTGTATCCTTGCAATGGGAATGAATTCTAACACAGTGTGCACCAAGGAGAAGGAAAAGTCCTTCGAGACAACGTTCATTCAGAATCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGGCACAGAGAGGCTTGCCTGAAAACTCTGTCTCAGTTCTAAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCACTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTTATCAATGCACGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAATTCCTTTCAAAATGATGAAGGATGA 1503 43.18 MASTNSVIVGEILPLRTPIAAGFPILLTLRESGCPATDADDHIVDQLGFLGSSPMATAPPRNDMGDVSGGCLNLSGNAEFQDQLAGAIPIASVSPVNAKDSAFSTPQFHQLGTFRTRFEHSSSNASNSSFASSLNCEGDESLCNANNEWENGHFPYNQPIARGNPVRSDFQTISSMENLVQNGWMPSNTMNSKLWNELSLSLATSKPVIVGGTNFLDQYSQLTFSGATQPCLNNTELACNSMDLSLSYNYGSPVHPSQAISGSRYLSVIQDILSQIASYPLESSDQVSHSSTTVGFVPFSSSSLETQWPKPSGDAKRSHLLTLQQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHFHYTYQTITSVYKSLREKITNCILAMGMNSNTVCTKEKEKSFETTFIQNQWALQQLKRKDNQLWRAQRGLPENSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRNSFQNDEG 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3539266 3541247 - CmoCh12G005740.1 Cmo12g00574 393262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00574 500 PANTHER HOMEOBOX PROTEIN ATH1 61 499 - -
Cmo12g00574 500 SUPERFAMILY Homeodomain-like 424 489 IPR009057 -
Cmo12g00574 500 ProSiteProfiles 'Homeobox' domain profile. 417 480 IPR001356 GO:0003677
Cmo12g00574 500 SMART prehox3 254 377 IPR006563 -
Cmo12g00574 500 Pfam Homeobox KN domain 437 476 IPR008422 GO:0003677|GO:0006355
Cmo12g00574 500 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 61 499 - -
Cmo12g00574 500 SMART HOX_1 420 484 IPR001356 GO:0003677
Cmo12g00574 500 Pfam Associated with HOX 260 376 IPR006563 -
Cmo12g00574 500 Gene3D - 423 485 - -
Cmo12g00574 500 CDD homeodomain 420 481 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00574 - - - mcha:111004597 705.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00107 Cmo12g00574 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00574 Cmo-Chr12:3539266 Cmo14g00358 Cmo-Chr14:1624151 2.07E-43 dispersed
Cmo12g00574 Cmo-Chr12:3539266 Cmo05g00107 Cmo-Chr5:431215 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g68 . . . . Bpe02g01536 . . . Cmo05g00107 Cmo12g00574 . Cma05g00100 . Car12g00582 . Cpe07g00555 . Bhi04g00500 . . . Hepe08g1385 . Lcy13g2179 . . . . . . . . . Cone17ag0921 Cone20ag0264 . . . . Blo17g00292 . Bda01g01326 Bda13g01607 Bpe14g00258 . Bma01g00927 . . . . . Cma12g00634 . Car05g00086 Cpe11g00080 . . . . . . . . . . . . . . . Lsi08g01577 Csa02g01843 Chy03g01640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003901 2 8 1 1 2 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10744 PF07526 POX 1.80E-15 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00574 Cmo_Chr12 FPKM 93.110695 95.114334 91.914558 88.818649 62.42062 52.06741 55.931873 174.786133 182.902496 180.386642