Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00579 ATGCTGTTCTTCGAGGATTTGTGGCAGATGCTCTGGTTTGAAGGTTTCCAAGATCAAACTCGACTTCTCTCTGAGTCCATTGTACGGACCGTATCCGAATCAATGGGCAATTCATCCTGTAGTGTATCTGAGTTAGAACTCTGTAGAGATGATTCGGCAGCGCTTAATTTCAAATTAATCGCCATTGCCTCGATTCTCACATCCGGAGTTTTGGGAATTGCCATTCCGTTATTCGGCAGACATCGCCGGTTTCTCAAAACGGATGGCAATCTCTTTGTAGCGACTAAGGCGTTTGCTGCCGGCGTGATTCTTGCGACGGCGTTTGTTCATATGCTTCCGGATGGATCGAAAGCTCTCTCCGATCCGTGCTTGCCGGAGTTTCCATGGTCGAAATTCCCCTTCTCTGGATTCTTCGCGATGATGGCGTCGCTTTTGACGCTCCTCGTCGATTTCGTTGGAACTCAGTATTACGAGAGGAAACAGGGGCAGATTCGATTGAAAGAAGAAACGAATCGGGTCGGGTCGGGTTTGGATTCCGGGTTGGAGGCTGGGATTCTCCCGGCCGCCGATTCGAACGTGAAAGTGTTCGGCGAAGAGGATGGCGGCGGGATGCACATCGTCGGAATGCATGCACACGCCGCGCAACACCGTCACAGTCATCCGCAGGGGAAGGATGCATGTGACGGGCACGTGACACTCCATGATCATGGCCATGGTCATTCTCATGGGCTGGACGGCGACGATGACGAAAGCGGTGTACGACATGTCGTTGTTTCCCAGATTTTGGAGCTTGGAATAGTGTCGCATTCAGTGATAATTGGGCTGTCTCTTGGAGTGTCCCACAGCCCATGCACCATAAGACCCTTAATTGCAGCTCTCTCGTTCCATCAATTCTTTGAAGGCTTTGCTCTTGGTGGCTGCATCTCTCAGGCTCAGTTCAACACCCTCTCAACCTCCCTCATGGCTGTGTTTTTCGCCGCCACCACGCCCGTCGGGATTGCCATTGGCGCGGCGATCTCTTCCACCTACAACCCGAACAGCACCGGAGCGTTGGTTGCCGAAGGCATTTTGGACTCTCTATCAGCTGGGATACTGGTGTATATGGCTTTGGTTGACTTGATCGCTGCTGACTTTCTTAGCAAGAGAATGAGCTGCAATTTTCGACTCCAAATTGTTTCGTATTGTACGCTCTTTCTCGGTGCGGGATTGATGTCGTTGCTCGCGCTATGGGCTTGA 1236 51.62 MLFFEDLWQMLWFEGFQDQTRLLSESIVRTVSESMGNSSCSVSELELCRDDSAALNFKLIAIASILTSGVLGIAIPLFGRHRRFLKTDGNLFVATKAFAAGVILATAFVHMLPDGSKALSDPCLPEFPWSKFPFSGFFAMMASLLTLLVDFVGTQYYERKQGQIRLKEETNRVGSGLDSGLEAGILPAADSNVKVFGEEDGGGMHIVGMHAHAAQHRHSHPQGKDACDGHVTLHDHGHGHSHGLDGDDDESGVRHVVVSQILELGIVSHSVIIGLSLGVSHSPCTIRPLIAALSFHQFFEGFALGGCISQAQFNTLSTSLMAVFFAATTPVGIAIGAAISSTYNPNSTGALVAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCTLFLGAGLMSLLALWA 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3584802 3587060 - CmoCh12G005790.1 Cmo12g00579 393267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00579 411 PANTHER ZIP ZINC/IRON TRANSPORT FAMILY PROTEIN 35 411 - -
Cmo12g00579 411 Pfam ZIP Zinc transporter 56 408 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo12g00579 411 PANTHER ZINC/IRON TRANSPORTER 35 411 - -
Cmo12g00579 411 TIGRFAM zip: ZIP zinc/iron transport family 40 411 IPR004698 GO:0005385|GO:0016021|GO:0071577
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00579 Cmo-Chr12:3584802 Cmo13g00470 Cmo-Chr13:5758732 2.05E-30 dispersed
Cmo19g01145 Cmo-Chr19:9642448 Cmo12g00579 Cmo-Chr12:3584802 3.97E-93 dispersed
Cmo12g00579 Cmo-Chr12:3584802 Cmo05g00102 Cmo-Chr5:408562 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00579 K14709 - csv:101218224 707.597