Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00580 ATGCGTGTAGAGGATGACGATGATCTTGAAACGAGGGATTCAAGATCGCTTCCGATTTCACCGCCGGCGTACAATTGGCTGACGAATTTCCATCGCGATTTGTTGGCTGGGGCAGTCATGGGCGGAGTAGTGCACACAATCGTTGCCCCAATTGAGAGGACCAAGCTTCTTTTACAGACTCAAGAGAGCAATCTGGCCATTGTTGCGGCTGGGCGAAGGAGATTCAAGGGTATGTTCGATTGTATTCTTCGCACCGTTAGGGAAGAAGGTATTCTTTCTTTGTGGAGAGGCAATGGAAGTAGTGTTCTTCGTTATTACCCTTCAGTTGCCCTAAATTTTTCTCTCAAGGATCTATATAAAGCAATGTTAAGGAATGGATTTGTAGATGGTCATTTTCTTTCTGGTTCATCAGCCAATTTTATTGCTGGGGCAGCTGCTGGTTGTTCGACGTTAGTTTTGATATACCCTTTAGATATTGCGCACACTCGTCTCGCTGCCGATATCGGAAGAACTGATGTCCGACAGTTTCGAGGCATCTGCCATTTCCTTGGTACCATATACAAAAAGGATGGGATTCAAGGGATTTACAGGGGACTTCCAGCCTCTCTACAAGGAATGGTCGTGCACCGAGGCCTTTATTTTGGCGGTTTCGACACGATGAAAGAGATTTTGGTCGAACCGTCCAAATCAGAGTTGGCACTATGGAAGCGATGGGGGGTCGCTCAAGTGGTCACAACGTCTGCTGGATTGTTATCGTATCCGTTCGATACAGTTCGAAGGCGGATGATGATGCAATCTGGGTTGGAGACGCCAATGTACAACAGCACTCTGGACTGCTGGAAGAAGATCTATCGATTGGAGGGGGTTAGCTCGTTCTATCGAGGCGCTGTGTCGAACATGTTCAGGAGTACAGGTTCCGCAGCAATCCTAGTTTTGTACGACGAGGTGAAGAAATTCATGAAATGGGGTGGGTTGTAG 978 47.34 MRVEDDDDLETRDSRSLPISPPAYNWLTNFHRDLLAGAVMGGVVHTIVAPIERTKLLLQTQESNLAIVAAGRRRFKGMFDCILRTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYKAMLRNGFVDGHFLSGSSANFIAGAAAGCSTLVLIYPLDIAHTRLAADIGRTDVRQFRGICHFLGTIYKKDGIQGIYRGLPASLQGMVVHRGLYFGGFDTMKEILVEPSKSELALWKRWGVAQVVTTSAGLLSYPFDTVRRRMMMQSGLETPMYNSTLDCWKKIYRLEGVSSFYRGAVSNMFRSTGSAAILVLYDEVKKFMKWGGL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3589821 3592918 + CmoCh12G005800.1 Cmo12g00580 393268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00580 325 PANTHER ADP,ATP CARRIER PROTEIN-RELATED 25 324 - -
Cmo12g00580 325 Gene3D Mitochondrial carrier domain 32 322 IPR023395 -
Cmo12g00580 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 236 319 IPR018108 -
Cmo12g00580 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 28 122 IPR018108 -
Cmo12g00580 325 Pfam Mitochondrial carrier protein 234 321 IPR018108 -
Cmo12g00580 325 Pfam Mitochondrial carrier protein 29 125 IPR018108 -
Cmo12g00580 325 Pfam Mitochondrial carrier protein 137 225 IPR018108 -
Cmo12g00580 325 SUPERFAMILY Mitochondrial carrier 28 315 IPR023395 -
Cmo12g00580 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 134 223 IPR018108 -
Cmo12g00580 325 PRINTS Adenine nucleotide translocator signature 30 42 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmo12g00580 325 PRINTS Adenine nucleotide translocator signature 75 96 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmo12g00580 325 PRINTS Adenine nucleotide translocator signature 108 120 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmo12g00580 325 PRINTS Adenine nucleotide translocator signature 134 147 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmo12g00580 325 PRINTS Adenine nucleotide translocator signature 237 253 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmo12g00580 325 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 25 324 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cmo12g00580 325 PRINTS Mitochondrial carrier protein signature 33 46 IPR002067 GO:0055085
Cmo12g00580 325 PRINTS Mitochondrial carrier protein signature 46 60 IPR002067 GO:0055085
Cmo12g00580 325 PRINTS Mitochondrial carrier protein signature 97 117 IPR002067 GO:0055085
Cmo12g00580 325 PRINTS Mitochondrial carrier protein signature 149 167 IPR002067 GO:0055085
Cmo12g00580 325 PRINTS Mitochondrial carrier protein signature 196 214 IPR002067 GO:0055085
Cmo12g00580 325 PRINTS Mitochondrial carrier protein signature 241 263 IPR002067 GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00580 K05863 SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 - csv:101204717 601.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00580 Cmo-Chr12:3589821 Cmo19g01035 Cmo-Chr19:9038739 1.79E-59 dispersed
Cmo12g00580 Cmo-Chr12:3589821 Cmo05g00099 Cmo-Chr5:399849 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g90 Blo01g01462 . . . . . Bma04g00124 . . Cmo12g00580 . . . . . Cpe07g00561 . . . . . . . . . . . . . . . . . . Cone20ag0273 . . . . . . . . . . . . . . . . Cma12g00641 . Car05g00075 Cpe11g00070 . . . . . . . . . . . . . . . Lsi08g01591 . Chy03g01656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007060 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00580 Cmo_Chr12 FPKM 0.290104 0.267386 0.251517 0.339426 1.489321 1.529905 1.873147 0.830063 1.296404 1.306169