Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00590 ATGCCTCCCTCCACGCATCAACCTGATGATGGGTTTCCCTTGAACACCACGGCCGTCGCCATTGACAAGGATAAGAATAGCCAACACGCCGTACAGTGGGCTATTGATCATCTCGTCATAAGCAACCCGCTTATAATTCTCATCCATGTTAGGCATAAAACCAATCAACATCAGGGCGCAAGCGATTCTGAAAATGGCGAAATTGATGCGCAGCAGCTGTTTGTTCCCTATCGTGGATATTGTGCGCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGATACCGATACTCCCAAAGCACTCGTCGACTACGTTCACAAGAATTGCATCAACAATTTTGTAGTTGGAGCTTCAACAAGGAGCGCTCTAGCGAGGAAATTTAAAGGTCCTGATATTCCGACCAGCATAATAAAAACTGCCCCGGACTTTTGTTCTGTATATGTAATATCAAAGGGGAAGATAATATCTGCCAGGGCTGCTCTTCGGCCAGTGGCGAATACTGCCATGCCACCAAGACAACCATCACCGCTTGGAATGCAGCCAAATAATCAACCAGACAGCAACAATGAACAAGAAAATGGAGCCAAAGGGCAACCAGCAAGGGAAGGTTGGAAGACTGCAGCTACAGAGAGAATGCTCAATGAAAGGAATGGTGCAAAGCCGGCAAAAGCGTTGACTCGTGAGAGGCCAAAAACTTCTCCGGCTAATATAACATTGGAAAATATCGAGGCTCCAAATCGAGGTTCTAGGCCTTCATTTAGTCGTGATTCGGTCTCTGACGAACATGTGTTGACAGCACAGATTCCTTTTGGTTCAATGGATGCGAGTGGTCAAAATTTAGATTTTAGTTCTAGCTCAGTTGGTTCAATGGACTCTGCTTCTGCACAATCGACTCGAGAACTAGAGGCCGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCAAGAGAACTGAGCCAGTGGAAGCAAGACGAGGCACGTAAGTTTGAAGAAGTCAGACTAGCTGAAGAAGCTGCTCTTGCTATTGCGGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCGCAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATGAAGGCCAGAAAAGAGACCGAAGAGAAAAAACGAGCATTGAATGCTCTAGCACAGAACGACGTCCGTTATAGAAAATACACCATAGAAGAGATAGAGGAATCTACTGAAATGTTCTCTGAAAAATTGAAGATTGGAGAAGGTGGATATGGTCCTGTTTATGGAGGCAAACTTGATCATACCGCCGTTGCAATTAAAGTTTTAAGACCCGACGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTGGAGGTCCTCTGTTGTATTAGACATCCAAACATGGTGCTCCTTCTTGGGGCATGCCCTGAGTATGGTTGCTTGGTGTATGAGTACATGCATAATGGGAGCTTAGAAGACAGACTCTTCCGGAGAGGGAATACTCCTCCAATCTCTTGGAGACGACGATTCAAGATAGCTGCTGAAATCGCAACCGCACTCCTTTTTCTTCACCAAGCAAAGCCAGAGCCACTGGTGCATAGGGACCTTAAACCAGCTAACATTCTCTTGGACCGCAATTACGTGAGCAAAATCAGTGATGTTGGCCTGGCTCGGTTAGTCCCTCCTTCGGTTGCTGATCAAGTCACCCAATATCATCTGACTTCAGCAGCTGGCACGTTTTGTTACATCGATCCTGAGTACCAACAAACAGGACAGTTAACAACAAAATCAGATATTTACTCTTTTGGAATAATGTTACTTCAAATCATTACTGCCAAACCTCCAATGGGTTTAGCTCACCATGTTCAAAGGGCTATCGAAAAAGAGCGGTTCAATGAGATGCTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATACATTTTGCAGAACTGGCTTTGAAGTGCGCTGAACTGAGGAAGAGAGACAGACCAGATCTTGGAACTGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATCTCGGGAGGAGTTCTGACAAACGCGATGGTCGGAATCAGTTTCCACGCTCTGCCGCATCGAGTTCCAGTTTGAGGGCGCAGTCATCGAATGAGGATTCGGGAAATAGTTATACTGATGAATGA 2226 45.87 MPPSTHQPDDGFPLNTTAVAIDKDKNSQHAVQWAIDHLVISNPLIILIHVRHKTNQHQGASDSENGEIDAQQLFVPYRGYCARKGVQLKEVVLDDTDTPKALVDYVHKNCINNFVVGASTRSALARKFKGPDIPTSIIKTAPDFCSVYVISKGKIISARAALRPVANTAMPPRQPSPLGMQPNNQPDSNNEQENGAKGQPAREGWKTAATERMLNERNGAKPAKALTRERPKTSPANITLENIEAPNRGSRPSFSRDSVSDEHVLTAQIPFGSMDASGQNLDFSSSSVGSMDSASAQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARKETEEKKRALNALAQNDVRYRKYTIEEIEESTEMFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPISWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGQLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFNEMLDPTISDCPLEEAIHFAELALKCAELRKRDRPDLGTVIVPELNRLRDLGRSSDKRDGRNQFPRSAASSSSLRAQSSNEDSGNSYTDE 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3618660 3622588 - CmoCh12G005900.1 Cmo12g00590 393278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00590 741 MobiDBLite consensus disorder prediction 180 196 - -
Cmo12g00590 741 MobiDBLite consensus disorder prediction 715 741 - -
Cmo12g00590 741 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 131 - -
Cmo12g00590 741 MobiDBLite consensus disorder prediction 168 261 - -
Cmo12g00590 741 MobiDBLite consensus disorder prediction 702 741 - -
Cmo12g00590 741 Pfam Protein tyrosine and serine/threonine kinase 437 691 IPR001245 GO:0004672|GO:0006468
Cmo12g00590 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Cmo12g00590 741 Pfam Universal stress protein family 19 130 IPR006016 -
Cmo12g00590 741 Gene3D HUPs 10 150 IPR014729 -
Cmo12g00590 741 Gene3D Phosphorylase Kinase; domain 1 400 505 - -
Cmo12g00590 741 Gene3D Transferase(Phosphotransferase) domain 1 506 717 - -
Cmo12g00590 741 MobiDBLite consensus disorder prediction 232 261 - -
Cmo12g00590 741 ProSiteProfiles Protein kinase domain profile. 433 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00590 741 SUPERFAMILY Protein kinase-like (PK-like) 416 691 IPR011009 -
Cmo12g00590 741 SMART serkin_6 433 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00590 741 Coils Coil 299 319 - -
Cmo12g00590 741 CDD STKc_IRAK 439 699 - -
Cmo12g00590 741 Coils Coil 359 410 - -
Cmo12g00590 741 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 729 - -
Cmo12g00590 741 PANTHER OS02G0152300 PROTEIN 16 729 - -
Cmo12g00590 741 CDD STK_N 16 153 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01403 Cmo12g00590 CST
Cmo05g00439 Cmo12g00590 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00590 Cmo-Chr12:3618660 Cmo19g00725 Cmo-Chr19:7529137 0 dispersed
Cmo17g00684 Cmo-Chr17:7007215 Cmo12g00590 Cmo-Chr12:3618660 0 transposed
Cmo12g00590 Cmo-Chr12:3618660 Cmo05g00439 Cmo-Chr5:2045072 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74727 PF07714 PK_Tyr_Ser-Thr 1.80E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00590 - - csv:101203326 1213.36