Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00591 ATGGAGGAAATGTTCCGAGCGGTTGTCGTGCCATTTAGTGTAGGTAATTCCGACATGGCAACTCCCATGGATATCACTAGACTCACTGCTGGTTTGTTATCTGATTCTGTGGCTAAGGCTTCTGACCACTTGACTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGGTTTCGGTTATGAACGATGACAAGTGCGAAGGAGTTTCGTTGTCGGTCGTGTTGTCTCAAAATAATAGCAATTGGGTTGCAGCTGATGAGACGATATCCCATGTAAGTGAGGAAGATGATTCTTTCTCTTTAGAGGGTATATATGATAGCTCGTGTTCGCATTCGGTAGTTAGTGAGACTAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCGTATTTCGAAGCATTTGGTTCCAAGGATGTTAGCAGTGTCGAGATTGCAGCTACAGCCAATGTTGAAAGTCTCGAGACTCCGATTGCGAGTTCTTCTTCTGCAGGAGTTAGCCTTGAAGAAGATATTGGAGATGGGTTAGGCATTGATGCATGTAACATGGTTCTCCAGCTTCCTCTTGAGAAAAGAGCAAACGAACCGGTTGGTCGAAGTGTTTTTGAGGTCGATTGTGTTCCTCTTTGGGGATTTACGTCCGTTTGTGGAAGAAGACCTGAAATGGAAGATGCAGCCACAGCTGTACCGAGGTTTTCAGAACTTCCTGTCCAAATGCTTATTGGCGACCGAGTTCTTGATGGCTCGAACAAGGCTATAGCTCACCAAACTGTTCATTTTTTTGGAGTCTATGATGGTCATGGTGGCTCTCAGGTCGCGAATTTTTGTCACGAACGTATGCATTTGGCTTTGTCTGAGGAGATAGAACTTGCTAAGCAAGACATAGCTGCTGGCAATATGAAGGATAGTTGCCAAGAGCTATGGAGAAAGGCATTCACCAAATGTTTTCTAAAAGTTGATGCTGAAATTGGAGGGAAACCTGGCGCTGAGCCTGTTGCACCCGAAACTGTAGGATCCACTGCTGTTGTTGCAATCATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGCGACTCGAGAGCAGTTCTTTGTCGTGGGAAGGAGCCTATAGCGTTGTCCGTGGATCACAAACCAAACAGAGAAGATGAATATGAAAGGATTGAAGCTGCTGGAGGAAAGGTCATACAGTGGAACGGGTACCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATCGGTGATAGATACTTGAAACCATGGATCATCCCGGAGCCAGAAGTGATGTTCCTCCCTCGAGCGAAAGACGACGAATGCCTCATTCTAGCCAGCGATGGTTTGTGGGACGTGATGACGAATGAAGAGGTATGCGACCTGGCTCGGAGACGAATCCTACTCTGGCACAAGAAGAACGGCATCCCTTCGCCTTCTGAGAGGGGCGTGGGGATCGATCCTGCAGCCCAAGCTGCAGCCGAATACCTCTCGAACCGAGCACTTCAAAAGGGCAGCAAAGACAACATCACAGTAATTGTGATTGATTTGAAAGCTCAAAGGAAGAAGTTCAAGGCCAAATCATAA 1587 46.31 MEEMFRAVVVPFSVGNSDMATPMDITRLTAGLLSDSVAKASDHLTEVGSDDCKSSNGEEEVSVMNDDKCEGVSLSVVLSQNNSNWVAADETISHVSEEDDSFSLEGIYDSSCSHSVVSETSSICGDDFLGSEVSYFEAFGSKDVSSVEIAATANVESLETPIASSSSAGVSLEEDIGDGLGIDACNMVLQLPLEKRANEPVGRSVFEVDCVPLWGFTSVCGRRPEMEDAATAVPRFSELPVQMLIGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANFCHERMHLALSEEIELAKQDIAAGNMKDSCQELWRKAFTKCFLKVDAEIGGKPGAEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPIALSVDHKPNREDEYERIEAAGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLILASDGLWDVMTNEEVCDLARRRILLWHKKNGIPSPSERGVGIDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKAQRKKFKAKS 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3625701 3629193 + CmoCh12G005910.1 Cmo12g00591 393279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00591 528 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 110 527 - -
Cmo12g00591 528 Pfam Protein phosphatase 2C 237 510 IPR001932 -
Cmo12g00591 528 SMART PP2C_4 203 515 IPR001932 -
Cmo12g00591 528 Gene3D - 200 527 IPR036457 -
Cmo12g00591 528 PANTHER ALPHABET, ISOFORM E-RELATED 110 527 - -
Cmo12g00591 528 ProSitePatterns PPM-type phosphatase domain signature. 264 272 IPR000222 GO:0043169
Cmo12g00591 528 CDD PP2Cc 215 517 IPR001932 -
Cmo12g00591 528 SUPERFAMILY PP2C-like 210 518 IPR036457 -
Cmo12g00591 528 ProSiteProfiles PPM-type phosphatase domain profile. 213 517 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00437 Cmo12g00591 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00699 Cmo-Chr8:4443521 Cmo12g00591 Cmo-Chr12:3625701 9.24E-73 dispersed
Cmo10g00696 Cmo-Chr10:3188808 Cmo12g00591 Cmo-Chr12:3625701 1.00E-88 dispersed
Cmo12g00591 Cmo-Chr12:3625701 Cmo14g01289 Cmo-Chr14:10793271 6.38E-157 dispersed
Cmo02g01826 Cmo-Chr2:10328967 Cmo12g00591 Cmo-Chr12:3625701 2.67E-22 transposed
Cmo18g01223 Cmo-Chr18:12131759 Cmo12g00591 Cmo-Chr12:3625701 1.80E-24 transposed
Cmo12g00591 Cmo-Chr12:3625701 Cmo05g00437 Cmo-Chr5:2039564 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00591 K14497 - csv:101207918 891.338