Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00593 ATGTCGTCTAGGTATTGTGATGGTAGAGGAGAGTCTGATGGGGGTCGGCTTCTTGAGGAAATTGAGGCAATAAGTAAGGCTCTGTACTTACACAAGGGCCACACAAATTCGAGTTTCGATCTTCCTGATCGACGGTTCGAATCAAATGAAGAAGAATTATTGGTGAATGAAACTAGAAGGTCGTCGTCATCATCATCTTCTTGGAACTGGAAGAAGTCTTTGAAAGCTCTTACTCATATTCGACATCGAAAGTTCAATTGTGTGTTTTTTCTGAAGGTTCATTCCATTGAAGGGTTACCCTCGAGTTTTAATGGCTATAGTTTACATGTGCATTGGAAAAGGAAGGATGAGGTTTTGCATACTCGCCCGTCTAAGGTTTTTCGAGGCGTGGCGGAATTTGATGAGACTTTGATTCATAAAACTTCGATATCTGGTGGGAGAAGTTTGGCTAACAACTCGGCGAAGTATGATCAAAAGCTTTACTTGATCTATGTTTCTATGGTCGGAGCGCCACGGCTCGAGTTTGGGAAGCATTGGATTGACCTGACGAGGATTTTGCCTCTTACATTGGAGGAGCTTGAAGGGGATAAATGTTCTGGGAACTGGTCAACCAGCTTTCGACTTGCTGGCAATGCGCGAGGTGCTACTCTAAATGTCAGCTTTAGCTTTCTGGTAACTAAGGACGATCCGATGAAATTGAGCGGTCCCGAAAACGTTGTCGAACTCTTGAAGTTATTGCATGATAGGTCAAGGCTTTCTACCTATGATGCACCCTTTACTTCAAGTAATTTAAATAGGTTTCGGGTTGATACGGGAATTTTCGATGAAGTAAACCCGAAATTGGAGCTCTCAAAGTCGATAAGCGTTTTGTATAGTAAGATGGATGAGGTAGATCATTCAGGTTCTGAGTTTGCCAAGCAGTTTGAAGTAAAAACTAATGAGGAACAAAAGTCTCCTGAAGTAATTGGTGGAGATAGTTATGAGAGTTTTAAGTTTTCCATTGTTGAATGTGGAATAGAATTAGCTGTTCAGACTATTGAGGGCTCGAAAATTGAAACGGTTTCATTGGACGAAGTCGTTGGAGATGACAAAGTTGCTACCGAATTTAAGTCGAGCAACACGTTGAAGGATTCGGAGTGCGATATTCATGTAGATGACTCGATAAGGGATGAATTCGAATATGAAGAGAGTAAGCTAAAACTAAAAGTAGAAGAAGTTTCTCCAGAAGAGTTGAGTTCAGATTCTGATCTCAAGAACTCTCCCTCGACCGTTGGTGAACTTCTCGAAGAGGAAAACGATATCGATGCCGAGGAAGATTGTACGAGAAGATCTCTTAGCCTGGATGAGTCTTACAAATCCGTGGCTAGTGATTTTCTAAAGCTGCTGGGGTTGGAGAATGGTTCGGCGAGGTTTTCAGATCCTGATATATCGTCTCCCAGAGAGCGTTTATTGAGGGAATTCGAGGAGGAGTCCCTACTTTTTGGTAATCCGTTATTGGACTTTTCGGGTACAGAAGAGTGGCAGGATAACGAAAACGTCGATATGCTGGAGTCTGCTTCTGGGGATTTTGATTTTTCTGTTCGTGTTGCTGAAGGACAGGAGGGGCATCAGTCCTTGAGAAACAGAAGGAACGTCGAAATTCTCGAAAACTTGGAGACCGAAGTTCTAATGCGAGAATGGGGCTTAGACGAGAGAGATTTCGAGCATTCTCCACATTATTGTTCGAGTGGATTTGGGAGTCCTATTGAGTTGCCCCCAGAAGACGAGCCACCTAAGTTACCTTCACTCGGAGATGGGTTCGGAGCATTCCTTAAGATGAACGGCGGGTTTTTACGGCTCATGAGTCCTTGGCTCTCTCAAAAGACTAGCATTGGACAGAGCTTAGCCATTCAATGTTCTGATCCTGTTGTTCTACCTAATGAAATGGGTCGTGATATCATGGAGATATCACAAAATCTAGCAATGGCAGGAACCAAAAACCTTTCTATACTCACAAAAAAGTTGATGCCTTTGGATGATATCACTGGGAAAACTCTCCACCAAATGATATCCAGTTGGAACTCGTGTGGTTCGGTTTCATGTTGTCGAAGGAACAACCCTGAAGGATTGCCATCGTATCCGAACAATAGTAGTCTTCGATCTCTTCTCGATTTCGAGATGCACCAAGAACTCATGTCACCTGATGATCTAGCTTTTCTAGCAATGGACAAGATTGAAACTCTCTTAATAGAAGGATTAAGAATTCAATCTGGCTTTACAGATGACGAGACACCACGACGAATCGGTGCTCGCCCGTTTCATTGCGTGTCAGCCTGTGGACCGAGACGTCCCAATCGGGATGGTTCTTGTAGCTCTGAAGGATTGAAGGAACTGCAGTTTATCGATCGCCCCGAAACAGCTAATGATGTTGTTGGGTTGATGGATCTTTGTATAACATTGAAGAACTGGTTAAAGCTTGATGCTGGTAACATTAATGATGATGGTGATCCAAATGGTCAGCATATTATGAAGACTCTTGTGGCTCATGGTGCTAACTATGCAGACATAGTTGAAAGGCTATCAGTTAACAAGTCCGGGGTATCCAGCAAAGAGATGGGCTTGTTTAAGAACAAGCTTGTGGTGGCTCTCATGGTGCAACTTCGAGATCACTTACGAGACTACGAACCGGTGGGCTGCCCAATGATGTGCATAATGGAGGTCGAGAGGTTCTTTATCGACACAGCTCATGACGCCGTCAGTGAAATGAGCTGCGTCGACAAGGAGAACGAGACATTGCAAGCACAAGGACACCATGTTCATGCATTTAAACTCGATGATATTCATCTTTTGGGTGTAAATTCTGAGCCTAATAGGATGCAATTCTGGGGAACCACGACGCAGCAGCAATCTGGGTCGCGTTGGCTGCTTTCAAGTGGAATGGGTAGAAACTTCAAGCTCCCGATATCGAAGTCGAAAGCAATCGTTACATTTTCGTCAAAAGCTCCGACTGGCGATATCTTGTGGAGCATTTCCTCTGATATACATGGTGAGGGAATGATCTCTGCTTCAACAGCTTCGAGTTCATATAAAAGAAACTTCGATGTCGTGATCCCGATCCGTAGTTGA 3105 43.74 MSSRYCDGRGESDGGRLLEEIEAISKALYLHKGHTNSSFDLPDRRFESNEEELLVNETRRSSSSSSSWNWKKSLKALTHIRHRKFNCVFFLKVHSIEGLPSSFNGYSLHVHWKRKDEVLHTRPSKVFRGVAEFDETLIHKTSISGGRSLANNSAKYDQKLYLIYVSMVGAPRLEFGKHWIDLTRILPLTLEELEGDKCSGNWSTSFRLAGNARGATLNVSFSFLVTKDDPMKLSGPENVVELLKLLHDRSRLSTYDAPFTSSNLNRFRVDTGIFDEVNPKLELSKSISVLYSKMDEVDHSGSEFAKQFEVKTNEEQKSPEVIGGDSYESFKFSIVECGIELAVQTIEGSKIETVSLDEVVGDDKVATEFKSSNTLKDSECDIHVDDSIRDEFEYEESKLKLKVEEVSPEELSSDSDLKNSPSTVGELLEEENDIDAEEDCTRRSLSLDESYKSVASDFLKLLGLENGSARFSDPDISSPRERLLREFEEESLLFGNPLLDFSGTEEWQDNENVDMLESASGDFDFSVRVAEGQEGHQSLRNRRNVEILENLETEVLMREWGLDERDFEHSPHYCSSGFGSPIELPPEDEPPKLPSLGDGFGAFLKMNGGFLRLMSPWLSQKTSIGQSLAIQCSDPVVLPNEMGRDIMEISQNLAMAGTKNLSILTKKLMPLDDITGKTLHQMISSWNSCGSVSCCRRNNPEGLPSYPNNSSLRSLLDFEMHQELMSPDDLAFLAMDKIETLLIEGLRIQSGFTDDETPRRIGARPFHCVSACGPRRPNRDGSCSSEGLKELQFIDRPETANDVVGLMDLCITLKNWLKLDAGNINDDGDPNGQHIMKTLVAHGANYADIVERLSVNKSGVSSKEMGLFKNKLVVALMVQLRDHLRDYEPVGCPMMCIMEVERFFIDTAHDAVSEMSCVDKENETLQAQGHHVHAFKLDDIHLLGVNSEPNRMQFWGTTTQQQSGSRWLLSSGMGRNFKLPISKSKAIVTFSSKAPTGDILWSISSDIHGEGMISASTASSSYKRNFDVVIPIRS 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3640083 3643187 + CmoCh12G005930.1 Cmo12g00593 393281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00593 1034 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 7 1031 IPR039614 -
Cmo12g00593 1034 ProSiteProfiles C2 NT-type domain profile. 77 225 IPR019448 -
Cmo12g00593 1034 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 82 229 IPR019448 -
Cmo12g00593 1034 MobiDBLite consensus disorder prediction 405 441 - -
Cmo12g00593 1034 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 2 7 1031 IPR039823 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00593 - - - cmax:111496096 1941.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00593 Cmo-Chr12:3640083 Cmo10g00786 Cmo-Chr10:3646458 6.85E-165 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g122 . Blo12g01021 Bda01g00632 Bda03g00135 . Bpe02g00500 . Bma01g02204 . Cmo12g00593 . . . . Sed08g1787 Cpe07g00569 . Bhi04g01490 Tan02g1608 Cmetu03g1951 . Hepe08g1409 . Lcy13g2199 . . . . . . . Cone4ag1683 Cone7ag1600 . . Lsi04g02237 . . . . . . . . Bpe04g00118 . . . . . . Cma12g00654 . . . . . . . . . . . Cla08g01002 . . Cco08g1152 Clacu08g1153 . Cre08g0938 Lsi08g00853 . Chy03g00671 .
Vvi11g132 . . . . . . . . . . . Cma12g00654 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g01074 . . . . . . Cmo12g00593 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009716 2 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00593 Cmo_Chr12 FPKM 37.982533 36.023067 118.486923 116.589058 2.670789 1.305855 3.210766 364.626465 361.147583 348.208374