Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00597 ATGGCAATCGATCCAAGGAACACCATGGGCGCCTTCGAACCAGATCAAGACCCATACGACAGTTCCATCAACGCCAACATTCTCAATTTCGCCAACGACCAAAACCCAACTCTCGACGACTTGCAGTCCACAGCAGAGCAGCCAGTGGCGGCGGCGCGTGACTCCCACGGCGGCCGAACAAGCGCTTTTCAGAACATGGGTATGGTGGAATTGTTGACACATTTCAGTTTCGGTGGACAATATGATTCAGAAGCAGGCCCCTCAAATGCCGGCGAAGCAGCAAGCAATTTTGAAGAAGATGATGATATTCAAATACCCAGTGAAGTCAAATCGAAATTGCTCGCAATTTGGCCCGTAACTCCGGTGCCGTTTCTGTGCAGTTGCTGCCAAGTTCTAAGAGAATTTCTTCATAGCAATGGGGTGAACAGCAGAAAACTGGAGATTCATGGTCGACTTGGAATGATCTGTCATGCAATTCTGGAACATAAACCGATTGTTAATGTGGATAATATAAGTCCTCAGTATCAAATGTTCGATTTTTGTGACAAAAGCTTTGAGGAGATCAAGCAGTTCTTGCTGCAGTATTGTTTGAAGCAAATTTTGGAGGATTATAATATGATTCCAGATCCGATGTCGAATTTCTACGACGCGCTTTGTGTCGGGATTGACTGGTTTGAAAATCTCAATACTACTGATGCGTTCTTCCAACAGTCTCCTGATAATTCTGAAGATGAAGATATGGATCAGTCCGTCCCTGGGTTCCAAAATGATACGCCTGAGCCGCAAGGCCAACCATCTAGACGGCCCTCGCTTGCAGCACAGAGGCAGAGAACAGGGAGGATGACGGTGAACGATGTGTGGGAGTATCTTCATCTTCCGATATCAGAAGCATCGAAGAAGTTGAATGTGTGCAATACGGTGTTGAAGAAGATATGTCGGCGGAGTGGTCTCAGCCGCTGGCCTTACAGAAAGATACGAAGTTACGAGAGGCGAATAGCAGCGCTGAAAACCACAATAAATTCCAGTTATGGAGACACTAGAACCCGAGCCGAAGCTGAGATCCAAAGGAGGTCAAATATTTGGCTGTTTTTTTTCCCTCCTTTTGCTTTCTCTCCTCCCTTCTTCCTCGCCGTGTTTCTCGATCTGTTGTTCATTTTTCTCTCTGTCAATCTTTCACTCTCTATCAATTTTGTGGCGCTTCCAGTTCGAAGGGTGAGAGCTGTCGGCCATGGACGGAGGTGCTCCGTACAATCCACGTACTGTGGAAGAGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGGTTTCCTAGTGAGCAGTGGGAAGTCAATTTACCAGCCGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTTGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAACTACGAAGGCAGTTCAATCAAAAGATGAGGACGAGGAAGGTTTGGATGAGGAAGACGAGGAAGAACACGGTGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTAAAGATCACTCCGGCAAGGGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAAAGAATCCGACCCTGA 1935 44.96 MAIDPRNTMGAFEPDQDPYDSSINANILNFANDQNPTLDDLQSTAEQPVAAARDSHGGRTSAFQNMGMVELLTHFSFGGQYDSEAGPSNAGEAASNFEEDDDIQIPSEVKSKLLAIWPVTPVPFLCSCCQVLREFLHSNGVNSRKLEIHGRLGMICHAILEHKPIVNVDNISPQYQMFDFCDKSFEEIKQFLLQYCLKQILEDYNMIPDPMSNFYDALCVGIDWFENLNTTDAFFQQSPDNSEDEDMDQSVPGFQNDTPEPQGQPSRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALKTTINSSYGDTRTRAEAEIQRRSNIWLFFFPPFAFSPPFFLAVFLDLLFIFLSVNLSLSINFVALPVRRVRAVGHGRRCSVQSTYCGRDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTTKAVQSKDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3678268 3683907 + CmoCh12G005970.1 Cmo12g00597 393285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00597 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 639 IPR013083 -
Cmo12g00597 644 Pfam Alfin 422 530 IPR021998 GO:0006355|GO:0042393
Cmo12g00597 644 Pfam RWP-RK domain 281 327 IPR003035 -
Cmo12g00597 644 MobiDBLite consensus disorder prediction 248 278 - -
Cmo12g00597 644 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 409 644 - -
Cmo12g00597 644 ProSiteProfiles Zinc finger PHD-type profile. 588 640 IPR019787 -
Cmo12g00597 644 MobiDBLite consensus disorder prediction 536 584 - -
Cmo12g00597 644 Pfam PHD-finger 591 640 IPR019787 -
Cmo12g00597 644 SMART PHD_3 590 638 IPR001965 -
Cmo12g00597 644 MobiDBLite consensus disorder prediction 235 278 - -
Cmo12g00597 644 ProSitePatterns Zinc finger PHD-type signature. 591 637 IPR019786 -
Cmo12g00597 644 ProSiteProfiles RWP-RK domain profile. 268 348 IPR003035 -
Cmo12g00597 644 PANTHER CPG BINDING PROTEIN 409 644 IPR045104 GO:0006355|GO:0042393
Cmo12g00597 644 SUPERFAMILY FYVE/PHD zinc finger 580 641 IPR011011 -
Cmo12g00597 644 CDD PHD_AL_plant 590 640 IPR044104 -
Cmo12g00597 644 MobiDBLite consensus disorder prediction 536 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00597 - - - cmax:111496477 710.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00430 Cmo12g00597 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00597 Cmo-Chr12:3678268 Cmo12g01349 Cmo-Chr12:11655177 2.68E-110 dispersed
Cmo16g00577 Cmo-Chr16:2791791 Cmo12g00597 Cmo-Chr12:3678268 4.68E-10 dispersed
Cmo01g01802 Cmo-Chr1:13248136 Cmo12g00597 Cmo-Chr12:3678268 2.03E-76 transposed
Cmo12g00597 Cmo-Chr12:3678268 Cmo05g00430 Cmo-Chr5:2007974 1.21E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
Vvi11g125 . Blo16g00972 . . . . . . . . . Cma12g00657 . Car12g00605 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo12g00597 . . . . . . Bhi06g01618 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g00939 . 1 293 Alfin-like Transcription Factor Family AT1G14510 71.7 6.3e-107 384.4
Cmo12g01349 . 73 313 Alfin-like Transcription Factor Family AT1G14510 69.0 2.1e-94 342.8
Cmo08g00755 CST 10 245 Alfin-like Transcription Factor Family AT1G14510 68.8 5.2e-93 338.2
Cmo05g00430 CST 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 6.8e-93 337.8
Cmo05g01413 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.3 1.5e-92 336.7
Cmo17g00678 CST 10 248 Alfin-like Transcription Factor Family AT1G14510 66.8 2.7e-89 325.9
Cmo12g00597 CST 411 641 Alfin-like Transcription Factor Family AT1G14510 66.7 5.8e-84 308.1
Cmo14g00058 CST 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.6e-78 290.0
Cmo04g00150 CST,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 5.2e-77 285.0
Cmo04g01181 CST,ECH 9 238 Alfin-like Transcription Factor Family AT1G14510 59.2 1.2e-76 283.9
Cmo06g00221 CST 8 236 Alfin-like Transcription Factor Family AT1G14510 57.8 1.7e-72 270.0
Cmo16g00814 . 1 169 Alfin-like Transcription Factor Family AT1G14510 79.9 8.7e-64 241.1
Cmo12g01349 . 65 315 Alfin-like Transcription Factor Family AT5G26210 75.2 6.2e-110 394.4
Cmo05g00430 CST 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.6e-108 389.0
Cmo05g01413 . 1 250 Alfin-like Transcription Factor Family AT5G26210 73.6 2.2e-107 386.0
Cmo08g00755 CST 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 2.7e-97 352.4
Cmo17g00678 CST 1 250 Alfin-like Transcription Factor Family AT5G26210 64.2 1.5e-95 346.7
Cmo12g00597 CST 424 643 Alfin-like Transcription Factor Family AT5G26210 72.5 9.9e-92 334.0
Cmo04g00939 . 9 295 Alfin-like Transcription Factor Family AT5G26210 63.2 4.3e-87 318.5
Cmo14g00058 CST 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 3.0e-80 295.8
Cmo04g00150 CST,ECH 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 5.1e-80 295.0
Cmo04g01181 CST,ECH 9 240 Alfin-like Transcription Factor Family AT5G26210 58.4 7.4e-79 291.2
Cmo06g00221 CST 8 238 Alfin-like Transcription Factor Family AT5G26210 54.9 2.5e-71 266.2
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT5G26210 68.0 3.5e-52 202.6
Cmo12g01349 . 65 315 Alfin-like Transcription Factor Family AT3G42790 72.2 2.1e-102 369.4
Cmo05g01413 . 1 250 Alfin-like Transcription Factor Family AT3G42790 69.3 2.8e-99 359.0
Cmo05g00430 CST 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.8e-99 359.0
Cmo08g00755 CST 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 1.5e-95 346.7
Cmo17g00678 CST 1 250 Alfin-like Transcription Factor Family AT3G42790 62.2 3.0e-93 339.0
Cmo12g00597 CST 411 643 Alfin-like Transcription Factor Family AT3G42790 67.1 1.0e-85 313.9
Cmo04g00939 . 9 295 Alfin-like Transcription Factor Family AT3G42790 60.6 3.7e-83 305.4
Cmo04g00150 CST,ECH 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.7e-80 296.6
Cmo04g01181 CST,ECH 9 240 Alfin-like Transcription Factor Family AT3G42790 59.9 1.5e-79 293.5
Cmo14g00058 CST 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 4.2e-79 292.0
Cmo06g00221 CST 8 238 Alfin-like Transcription Factor Family AT3G42790 55.8 1.3e-72 270.4
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT3G42790 63.7 1.1e-47 187.6
Cmo04g01181 CST,ECH 1 241 Alfin-like Transcription Factor Family AT5G05610 77.3 3.1e-111 398.7
Cmo04g00150 CST,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 7.6e-110 394.0
Cmo14g00058 CST 1 240 Alfin-like Transcription Factor Family AT5G05610 76.3 1.1e-108 390.2
Cmo06g00221 CST 1 239 Alfin-like Transcription Factor Family AT5G05610 71.0 3.9e-98 355.1
Cmo08g00755 CST 10 250 Alfin-like Transcription Factor Family AT5G05610 65.7 2.1e-91 332.8
Cmo05g01413 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.6 2.3e-90 329.3
Cmo12g01349 . 72 315 Alfin-like Transcription Factor Family AT5G05610 65.6 2.3e-90 329.3
Cmo05g00430 CST 8 252 Alfin-like Transcription Factor Family AT5G05610 64.1 8.2e-88 320.9
Cmo17g00678 CST 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 2.4e-87 319.3
Cmo12g00597 CST 424 643 Alfin-like Transcription Factor Family AT5G05610 66.4 7.5e-81 297.7
Cmo04g00939 . 9 295 Alfin-like Transcription Factor Family AT5G05610 53.0 1.3e-77 287.0
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT5G05610 57.0 7.8e-46 181.4
Cmo04g01181 CST,ECH 43 241 Alfin-like Transcription Factor Family AT3G11200 79.7 3.9e-95 345.1
Cmo04g00150 CST,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 1.1e-92 337.0
Cmo14g00058 CST 43 240 Alfin-like Transcription Factor Family AT3G11200 77.7 9.4e-89 323.9
Cmo06g00221 CST 44 239 Alfin-like Transcription Factor Family AT3G11200 72.6 5.2e-79 291.6
Cmo12g00597 CST 435 643 Alfin-like Transcription Factor Family AT3G11200 64.9 4.5e-75 278.5
Cmo08g00755 CST 44 250 Alfin-like Transcription Factor Family AT3G11200 65.4 6.5e-74 274.6
Cmo05g01413 . 44 250 Alfin-like Transcription Factor Family AT3G11200 63.8 8.5e-74 274.2
Cmo12g01349 . 108 315 Alfin-like Transcription Factor Family AT3G11200 62.9 2.5e-73 272.7
Cmo17g00678 CST 44 250 Alfin-like Transcription Factor Family AT3G11200 63.8 4.7e-72 268.5
Cmo05g00430 CST 44 252 Alfin-like Transcription Factor Family AT3G11200 62.1 2.3e-71 266.2
Cmo04g00939 . 85 295 Alfin-like Transcription Factor Family AT3G11200 63.0 2.2e-69 259.6
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT3G11200 58.1 4.9e-45 178.7
Cmo04g00939 . 1 205 Alfin-like Transcription Factor Family AT2G02470 67.3 6.7e-72 268.1
Cmo05g01413 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.9 3.6e-65 245.7
Cmo12g01349 . 65 222 Alfin-like Transcription Factor Family AT2G02470 75.3 1.0e-64 244.2
Cmo05g00430 CST 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.3e-64 243.0
Cmo08g00755 CST 10 158 Alfin-like Transcription Factor Family AT2G02470 76.5 3.7e-62 235.7
Cmo17g00678 CST 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 3.7e-62 235.7
Cmo14g00058 CST 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Cmo04g01181 CST,ECH 9 155 Alfin-like Transcription Factor Family AT2G02470 68.0 9.1e-53 204.5
Cmo04g00150 CST,ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 9.1e-53 204.5
Cmo06g00221 CST 8 175 Alfin-like Transcription Factor Family AT2G02470 61.8 1.2e-52 204.1
Cmo12g00597 CST 424 549 Alfin-like Transcription Factor Family AT2G02470 79.4 1.6e-52 203.8
Cmo12g01349 . 65 228 Alfin-like Transcription Factor Family AT5G20510 77.0 1.1e-71 266.9
Cmo05g00430 CST 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 7.2e-71 264.2
Cmo08g00755 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 4.0e-69 258.5
Cmo17g00678 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.4e-68 255.4
Cmo05g01413 . 1 164 Alfin-like Transcription Factor Family AT5G20510 72.1 4.8e-67 251.5
Cmo04g00939 . 3 213 Alfin-like Transcription Factor Family AT5G20510 55.9 2.4e-58 222.6
Cmo12g00597 CST 411 558 Alfin-like Transcription Factor Family AT5G20510 71.6 5.4e-58 221.5
Cmo04g00150 CST,ECH 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 4.0e-53 205.3
Cmo14g00058 CST 4 157 Alfin-like Transcription Factor Family AT5G20510 61.9 7.5e-52 201.1
Cmo04g01181 CST,ECH 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.9e-51 198.4
Cmo06g00221 CST 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.8e-50 196.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008228 3 0 3 2 3 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10747 PF12165 Alfin 4.50E-57 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00597 Cmo_Chr12 FPKM 10.849813 11.385205 30.796597 29.18461 6.226982 5.980343 5.55314 34.342228 36.566692 34.387566