Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00597 ATGGCAATCGATCCAAGGAACACCATGGGCGCCTTCGAACCAGATCAAGACCCATACGACAGTTCCATCAACGCCAACATTCTCAATTTCGCCAACGACCAAAACCCAACTCTCGACGACTTGCAGTCCACAGCAGAGCAGCCAGTGGCGGCGGCGCGTGACTCCCACGGCGGCCGAACAAGCGCTTTTCAGAACATGGGTATGGTGGAATTGTTGACACATTTCAGTTTCGGTGGACAATATGATTCAGAAGCAGGCCCCTCAAATGCCGGCGAAGCAGCAAGCAATTTTGAAGAAGATGATGATATTCAAATACCCAGTGAAGTCAAATCGAAATTGCTCGCAATTTGGCCCGTAACTCCGGTGCCGTTTCTGTGCAGTTGCTGCCAAGTTCTAAGAGAATTTCTTCATAGCAATGGGGTGAACAGCAGAAAACTGGAGATTCATGGTCGACTTGGAATGATCTGTCATGCAATTCTGGAACATAAACCGATTGTTAATGTGGATAATATAAGTCCTCAGTATCAAATGTTCGATTTTTGTGACAAAAGCTTTGAGGAGATCAAGCAGTTCTTGCTGCAGTATTGTTTGAAGCAAATTTTGGAGGATTATAATATGATTCCAGATCCGATGTCGAATTTCTACGACGCGCTTTGTGTCGGGATTGACTGGTTTGAAAATCTCAATACTACTGATGCGTTCTTCCAACAGTCTCCTGATAATTCTGAAGATGAAGATATGGATCAGTCCGTCCCTGGGTTCCAAAATGATACGCCTGAGCCGCAAGGCCAACCATCTAGACGGCCCTCGCTTGCAGCACAGAGGCAGAGAACAGGGAGGATGACGGTGAACGATGTGTGGGAGTATCTTCATCTTCCGATATCAGAAGCATCGAAGAAGTTGAATGTGTGCAATACGGTGTTGAAGAAGATATGTCGGCGGAGTGGTCTCAGCCGCTGGCCTTACAGAAAGATACGAAGTTACGAGAGGCGAATAGCAGCGCTGAAAACCACAATAAATTCCAGTTATGGAGACACTAGAACCCGAGCCGAAGCTGAGATCCAAAGGAGGTCAAATATTTGGCTGTTTTTTTTCCCTCCTTTTGCTTTCTCTCCTCCCTTCTTCCTCGCCGTGTTTCTCGATCTGTTGTTCATTTTTCTCTCTGTCAATCTTTCACTCTCTATCAATTTTGTGGCGCTTCCAGTTCGAAGGGTGAGAGCTGTCGGCCATGGACGGAGGTGCTCCGTACAATCCACGTACTGTGGAAGAGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGGTTTCCTAGTGAGCAGTGGGAAGTCAATTTACCAGCCGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTTGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCTGAACCTCAAATAAAAACTACGAAGGCAGTTCAATCAAAAGATGAGGACGAGGAAGGTTTGGATGAGGAAGACGAGGAAGAACACGGTGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAATGTGTAAAGATCACTCCGGCAAGGGCAGAGCATATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAAAGAATCCGACCCTGA 1935 44.96 MAIDPRNTMGAFEPDQDPYDSSINANILNFANDQNPTLDDLQSTAEQPVAAARDSHGGRTSAFQNMGMVELLTHFSFGGQYDSEAGPSNAGEAASNFEEDDDIQIPSEVKSKLLAIWPVTPVPFLCSCCQVLREFLHSNGVNSRKLEIHGRLGMICHAILEHKPIVNVDNISPQYQMFDFCDKSFEEIKQFLLQYCLKQILEDYNMIPDPMSNFYDALCVGIDWFENLNTTDAFFQQSPDNSEDEDMDQSVPGFQNDTPEPQGQPSRRPSLAAQRQRTGRMTVNDVWEYLHLPISEASKKLNVCNTVLKKICRRSGLSRWPYRKIRSYERRIAALKTTINSSYGDTRTRAEAEIQRRSNIWLFFFPPFAFSPPFFLAVFLDLLFIFLSVNLSLSINFVALPVRRVRAVGHGRRCSVQSTYCGRDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKTTKAVQSKDEDEEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3678268 3683907 + CmoCh12G005970.1 Cmo12g00597 393285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00597 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 639 IPR013083 -
Cmo12g00597 644 Pfam Alfin 422 530 IPR021998 GO:0006355|GO:0042393
Cmo12g00597 644 Pfam RWP-RK domain 281 327 IPR003035 -
Cmo12g00597 644 MobiDBLite consensus disorder prediction 248 278 - -
Cmo12g00597 644 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 409 644 - -
Cmo12g00597 644 ProSiteProfiles Zinc finger PHD-type profile. 588 640 IPR019787 -
Cmo12g00597 644 MobiDBLite consensus disorder prediction 536 584 - -
Cmo12g00597 644 Pfam PHD-finger 591 640 IPR019787 -
Cmo12g00597 644 SMART PHD_3 590 638 IPR001965 -
Cmo12g00597 644 MobiDBLite consensus disorder prediction 235 278 - -
Cmo12g00597 644 ProSitePatterns Zinc finger PHD-type signature. 591 637 IPR019786 -
Cmo12g00597 644 ProSiteProfiles RWP-RK domain profile. 268 348 IPR003035 -
Cmo12g00597 644 PANTHER CPG BINDING PROTEIN 409 644 IPR045104 GO:0006355|GO:0042393
Cmo12g00597 644 SUPERFAMILY FYVE/PHD zinc finger 580 641 IPR011011 -
Cmo12g00597 644 CDD PHD_AL_plant 590 640 IPR044104 -
Cmo12g00597 644 MobiDBLite consensus disorder prediction 536 565 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00430 Cmo12g00597 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00597 Cmo-Chr12:3678268 Cmo12g01349 Cmo-Chr12:11655177 2.68E-110 dispersed
Cmo16g00577 Cmo-Chr16:2791791 Cmo12g00597 Cmo-Chr12:3678268 4.68E-10 dispersed
Cmo01g01802 Cmo-Chr1:13248136 Cmo12g00597 Cmo-Chr12:3678268 2.03E-76 transposed
Cmo12g00597 Cmo-Chr12:3678268 Cmo05g00430 Cmo-Chr5:2007974 1.21E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10747 PF12165 Alfin 4.50E-57 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00597 - - cmax:111496477 710.679