Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00611 ATGGCCGCCTGCTGCAGAGGATTTCCGACCCATTTCTATTTCGATAGGCGGGTCGAGTCGGTTCTGTTGCGTGGCCATGGGGGGGCCGAGCTGAGAAGGAGGACATGGGGGAGGATTCTGTTTGGGATTAGTCGAGTTGGGTTTAGTCCTATTCGTTGCTGCTGTTCTGATTCTATGGTTCCGATACGTAGAATTACTGGGTCTGGGAAGAGCGTAGAGAAGCAAGAAGATTGGCGTTTCGATGCCAAAAAAGCACCTCGTAAACTCTGTATCCAAGCCACTCCTGCAATGCCCTTTGCTTCCCCTCAATCTCGGTTTATTTCCAAGCCAGAAATACTCCCTCGCTGCACCCCAAGGGGCTCTGGTCCACAATCACGTGATTCTCCGCCAAAAAGAGACACTGGCATTGCAAATGAGAAGGACTGGGGAATCAACTTGTTGAATGAAAATGTTAACGAGTCGGGCACAAATGAAGATGGCAGTACTTGGTATAGGGAAAGTGGGGAGGACCTTGGAGATAATGGATACCGATGTAGGTGGACTAGGATGGGCGGTCAATCTCATGATGGTTACTCAGAATGGAAAGAAACGTGGTGGGAGAAAAGTGACTGGACTGGATACAAAGAGCTAGGAGTGGAAAAATCGGGCAAAAACGTTGAAGGTGATTCGTGGTGGGAAACATGGCAAGAAGTTCTTCATCAAGACGAATGGAGTAATCTTGCAAGGATTGAGAGGAGTGCACAGAAACGAGCAAAATCTGGCACTGAAAATGCTGGATGGCATGAGAAATGGTGGGAGAAATACGACGCCAAAGGTTGGACCGAAAAAGGAGCACATAAATATGGTAGATTGAATGAACAATCATGGTGGGAAAAGTGGGGAGAGCATTACGACGGAAGAGGATCCGTTCTTAAATGGACGGATAAATGGGCTGAAACTGAACTAGGCACCAAATGGGGAGACAAGTGGGAAGAGAAGTTCTTCTCTGGAATCGGTTCTCGACAAGGGGAGACATGGCACGTATCTCCTAGTAGCGAACTGGAACTAACTGGCTTCCCGTCACATGTACAAGGTTGGTCAAGAACATGGGGTGAAGAACACTTCGGGAATGGTAAAGTGCACAAATATGGGAAGAGCACGACAGGGGAAAGTTGGGATATTGTTGTGGATGAAGAGACATACTATGAGGCCGAGCCTCACTACGGATGGGCGGATGTAGTTGGCGACTCGAGTCAGTTGCTGTCGATACAAGCTCGAGAGAGGCCACCTGGTGTCTACCCGAATCTCGACTTTGGATCGTCCCCTCCTGCTCCGACTGAGGAACCACCCCAAGAACTGCCTCCTCCACAATGA 1353 49.15 MAACCRGFPTHFYFDRRVESVLLRGHGGAELRRRTWGRILFGISRVGFSPIRCCCSDSMVPIRRITGSGKSVEKQEDWRFDAKKAPRKLCIQATPAMPFASPQSRFISKPEILPRCTPRGSGPQSRDSPPKRDTGIANEKDWGINLLNENVNESGTNEDGSTWYRESGEDLGDNGYRCRWTRMGGQSHDGYSEWKETWWEKSDWTGYKELGVEKSGKNVEGDSWWETWQEVLHQDEWSNLARIERSAQKRAKSGTENAGWHEKWWEKYDAKGWTEKGAHKYGRLNEQSWWEKWGEHYDGRGSVLKWTDKWAETELGTKWGDKWEEKFFSGIGSRQGETWHVSPSSELELTGFPSHVQGWSRTWGEEHFGNGKVHKYGKSTTGESWDIVVDEETYYEAEPHYGWADVVGDSSQLLSIQARERPPGVYPNLDFGSSPPAPTEEPPQELPPPQ 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3820714 3825889 + CmoCh12G006110.1 Cmo12g00611 393299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00611 450 PANTHER - 48 437 - -
Cmo12g00611 450 MobiDBLite consensus disorder prediction 418 450 - -
Cmo12g00611 450 PANTHER INACTIVE PURPLE ACID PHOSPHATASE-LIKE PROTEIN 48 437 - -
Cmo12g00611 450 MobiDBLite consensus disorder prediction 110 139 - -
Cmo12g00611 450 MobiDBLite consensus disorder prediction 436 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00611 - - - mcha:111020728 850.506
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g01006 Cmo12g00611 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01094 Cmo-Chr8:7024957 Cmo12g00611 Cmo-Chr12:3820714 7.49E-57 dispersed
Cmo12g00611 Cmo-Chr12:3820714 Cmo17g00194 Cmo-Chr17:1158905 1.33E-57 dispersed
Cmo12g00611 Cmo-Chr12:3820714 Cmo05g01006 Cmo-Chr5:8084381 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g117 Blo01g01623 Blo12g00861 . Bda03g00312 Bpe02g00319 Bpe04g00273 Bma04g00280 Bma01g02398 Cmo05g01006 Cmo12g00611 . . . Car12g00653 . . Cpe07g00584 Bhi04g01564 . . . Hepe08g1488 . Lcy13g2252 Cla08g00959 . . . . . . Cone4ag2011 . . . . . . Cme03g01353 . . Bda11g00960 . . . . . . . . Cma12g00673 Cma05g00988 Car05g00868 . Cpe11g00797 . . . . . . . . . . . . . . . Lsi08g00798 . Chy03g00628 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003828 2 4 2 2 2 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00611 Cmo_Chr12 FPKM 0.0 1.054015 0.931997 1.853822 6.090605 4.670037 4.69432 14.085797 13.046464 12.923182