Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00620 ATGCGGCGGAAGCCTCTTTCCACTCTTCTATTCGCCGTCGCGATCTTTCTCGTCTTCGCCTTTCAACTATCCCGGAAGGCCTTCTTCTACGGCGGCGACCTCCCTTTCCCCTCTCCCTCTGCCCTTCTTACTTCTCACTCTGCTAATTCCGTCGCTCATTACGCTCTTCATGAAGCGGCGTTCCCGGAGAATCTCGCTCACTGGAGTCGCCACGTGTCCTCCATTCTCGATCCTATCCCTACGGTTTCCTCCCTTCTTCTTCCCGATTGGGAGGTTCTTTTGATTTCTTCAATCGACGCGCCGCTCTCTTCGCCGGATTCTCTCCGGGGTCTCCTCTGTGTGTTTCAGAACAATGATACTTCACCGGCTAAATTCTCCGGGAGTTTGGAGTTTAATTCTCCTGCTATGTTTAAATGCCTTATGCCGGAGAGTGTCCGCCGTCTCCGGCCGTATTTTCAACCACTACTAACCAACTCGCCGGAGAAGGTGTTTTCTTCTCCCATGCCGGAATTGATCAGGTGGACTTTCTTCGCTTATGAAGCTCTCGAAACAGAGGACGACGTCGTTCTGTTCGTCAAAGGCGTCAACCATCGCCAAGGCAGTAACCGCCCCCCGACTGGTTTAAAATGCGTGTTCGGCGATGGCGATAAAGCCGTTAGAACCGCCGTTACCAGTTCAGTACAGGAGGTTTTCCGATGCCGTCATCCGAATTTAACGGTGCAAGAAGATCATCACCAGAAATTCAAAATCACTCTCGAGATTCTAGACGGCAAAGGTCGCAGCGTCCTCGTTCCGTCGGTAGCTTATTACTCGCCGCGACGCCGTATTACCGGCGGAGAAACCGAGGCGAAATCGACTATTTGTGCTTGTACGATGGTTTACAACGTCGGAAAATTCCTGAAAGAATGGGTGATGTATTACTCGAAAATCGGCGTCGAGAAGTTCATCTTGTACGACAACGGCAGCGACGATGAAATTTCGGCGGTGGTGAAGGAATTGAATAAGGAAGGATACAATATCGAAATCGTGTTCTGGATTTGGCCGAAAACGCAAGAGGCTGGATTCTCTCACAGCGTTGAGTATTCGAAGAGATCGTGCAAATGGATGCTGTTCATGGACGTCGACGAATTCATCTTCTCTCCGTCGTGGTTGAATTCATTGAATCCATCGAAGGAGATGCTGAAATCTCTGCTTCCGGCGGAGAAAAGCAGAGTCGGAATGGTAACGATCATGTGCAACGACTACGGACCGTCGGATCGAATCTCGAATCCGGCGGAAGGCGTAACACAAGGCTACAATTGCCGGAGAAGAATAGAGGAAAGGCATAAATCGATTGTTCTATTGGAGGCGGTGGATGAATCGCTGTTGAATGTGATCCACCATTTTCAATTGAGGACGGAGTTTCGATCGAGGCAGATGAGAACAGAGGAGGCGGTAGTGAATCACTACAAGTACCAAGCGTGGCCGGAATTTCGGTTGAAATTCCGGCGGCGCGTATCGGCTTACGTTTTGGATTGGACGAATTCCGGCAATCCGACGTCTAAAGACAGGGCGCCGGGTCTCGGGAACTCCGCCGTGGAGCCACCGGAGTGGCCGAGGAAGTTTTGTGAGGTCAGGGATGATCGGTTGAGATTACTGACGCAGAGATGGTTCGGGTTGCAGACGGCGGAGGGGTACAGAATGACATGGCAATGA 1695 51.15 MRRKPLSTLLFAVAIFLVFAFQLSRKAFFYGGDLPFPSPSALLTSHSANSVAHYALHEAAFPENLAHWSRHVSSILDPIPTVSSLLLPDWEVLLISSIDAPLSSPDSLRGLLCVFQNNDTSPAKFSGSLEFNSPAMFKCLMPESVRRLRPYFQPLLTNSPEKVFSSPMPELIRWTFFAYEALETEDDVVLFVKGVNHRQGSNRPPTGLKCVFGDGDKAVRTAVTSSVQEVFRCRHPNLTVQEDHHQKFKITLEILDGKGRSVLVPSVAYYSPRRRITGGETEAKSTICACTMVYNVGKFLKEWVMYYSKIGVEKFILYDNGSDDEISAVVKELNKEGYNIEIVFWIWPKTQEAGFSHSVEYSKRSCKWMLFMDVDEFIFSPSWLNSLNPSKEMLKSLLPAEKSRVGMVTIMCNDYGPSDRISNPAEGVTQGYNCRRRIEERHKSIVLLEAVDESLLNVIHHFQLRTEFRSRQMRTEEAVVNHYKYQAWPEFRLKFRRRVSAYVLDWTNSGNPTSKDRAPGLGNSAVEPPEWPRKFCEVRDDRLRLLTQRWFGLQTAEGYRMTWQ 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3885391 3887085 - CmoCh12G006200.1 Cmo12g00620 393308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00620 564 CDD Glyco_tranf_GTA_type 293 413 - -
Cmo12g00620 564 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 275 485 IPR029044 -
Cmo12g00620 564 PANTHER UNCHARACTERIZED 49 564 - -
Cmo12g00620 564 Pfam Glycosyltransferase family 92 285 499 IPR008166 -
Cmo12g00620 564 SUPERFAMILY Nucleotide-diphospho-sugar transferases 285 389 IPR029044 -
Cmo12g00620 564 PANTHER GLYCOSYLTRANSFERASE FAMILY 92 PROTEIN 49 564 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00620 - - - csv:101208646 925.235
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00357 Cmo12g00620 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00620 Cmo-Chr12:3885391 Cmo15g00103 Cmo-Chr15:514964 2.98E-34 dispersed
Cmo12g00620 Cmo-Chr12:3885391 Cmo05g00991 Cmo-Chr5:7983921 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g89 . . . . . . . . Cmo05g00357 Cmo12g00620 . . . Car12g00661 . . Cpe07g00594 Bhi04g00092 . . . Hepe10g0189 . Lcy13g1876 Cla08g00938 Cam08g1385 Cec08g0966 Cco08g1088 Clacu08g1092 . Cre08g0875 . . Cone17ag1457 Cone20ag0020 . . . Cme03g01550 Blo17g00906 . . . . . . . . . . Cma12g00683 Cma05g00353 Car05g00298 . Cpe11g00783 . . . . . . . . . . . . . . . Lsi08g00780 . Chy03g01060 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007942 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 0 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00620 Cmo_Chr12 FPKM 1.668373 0.614417 0.377471 0.0 1.644758 1.968431 2.437387 0.0 0.0 0.0