Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00629 ATGTCGGGATCTGAGACTGGTGTGGTGACGAGTAGGGAACCCTTTAGCATCGGCGTTCAGAATAGCTCCTTACAGTCGCAGGCGGCGGCCCAAAACATGCGATTAACCTTTAGCGCCGATGGTACGGCAGTTTACAAGCCTGTAACTCCTTCAACCTCACCGGCATATCAGTCCTCCATGGTCGGAGTTTCTGGTAATGACGGAAATGAGGGATCAGCGGGTGGGGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCGGTGGGCAGCGAGCAAGCAAAGAAGAAAAGGGGGAGGCCGAGGAAGTATGGACCAGATGGCTCCATGGCATTAGCTTTAGGTTCTGGGCCGCCTTCAGGAAGTGGAGGTTTTTCTCCTTCAACTATGGCTAATCCTGCTTCAGAGGGATTAGCCTCACCAAATTCAATGAAGAAAACTAAAGGCAGGCCACTTGGTTCTAAGAAAAAACAACAATTGGAAGCTTTGGGACCAGCTGGTATTGGATTCACTCCACATGTTATTAATGTGAAAGCCGGAGAGGATGTATCGTCGAAAATAATGTCCTTTTCTCAGAATGGCCCTAGGGCTATTTGTATCCTCTCTGCAAATGGAGCAATATCGAATGTGACTTTACGTCAATCTGCTATATCTGGTGGAACTGTTACTTATGAGGGTCGATTTGAAATCCTGTCACTCTCAGGTTCATTTCTGCTGTCTGAAAATGGTGGTCAGAGAAGCAGAACTGGTGGTTTGAGTGTTTCTTTGTCTGGTCCAGATGGCCGAGTGTTGGGTGGTGGTGTGGCGGGTCTTCTCACGGCTGCATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCGTAGTCGACAGCAACAAGGAACCGAAGTCAGACAGCCAAACAGAACCCATCTTCGCCTCGCAAATGCCAAACCCAGTTGGCTTTGGTCACTTAACAGGAGGAGGAGGAGGAGGAGGAGCCAGTAGTCCTTCTCACGGGACGCCGAGTGAGTCTTCCAGTGGCGACCCTGACAGCCCCCTTAACAACAGCTCTGGAGCCTGTGACGACAACAACAACCATCCGCAGGGCATGTCTGGCATGCCATGGAACATGATAATAGCAAAAGGCAAGTTAGGGAGAGATTCAGTTTCTGATGTTTTGGTGATCAAACCCGCTTTCTCTCTTTCCTTTTTTGAACTTCCCAAAAGCCGCCTCCTGAAGAAGCTGTCAATTGCCCACACCAAGCCTCCTCAAGCTCTCAAAACCCGCCTCCCACACCACTTTCAGTTTACGCTTTCAACCAGCATGCATTACGGTGAAAAGAGAGTTCTCTGTGCTTACACAATTGTGAATTGA 1347 49.22 MSGSETGVVTSREPFSIGVQNSSLQSQAAAQNMRLTFSADGTAVYKPVTPSTSPAYQSSMVGVSGNDGNEGSAGGGSMLPHGFNINSVGSEQAKKKRGRPRKYGPDGSMALALGSGPPSGSGGFSPSTMANPASEGLASPNSMKKTKGRPLGSKKKQQLEALGPAGIGFTPHVINVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQSAISGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVVDSNKEPKSDSQTEPIFASQMPNPVGFGHLTGGGGGGGASSPSHGTPSESSSGDPDSPLNNSSGACDDNNNHPQGMSGMPWNMIIAKGKLGRDSVSDVLVIKPAFSLSFFELPKSRLLKKLSIAHTKPPQALKTRLPHHFQFTLSTSMHYGEKRVLCAYTIVN 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3929478 3936746 - CmoCh12G006290.1 Cmo12g00629 393317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00629 448 MobiDBLite consensus disorder prediction 326 362 - -
Cmo12g00629 448 MobiDBLite consensus disorder prediction 289 304 - -
Cmo12g00629 448 Gene3D - 171 304 - -
Cmo12g00629 448 Pfam Plants and Prokaryotes Conserved (PCC) domain 171 285 IPR005175 -
Cmo12g00629 448 MobiDBLite consensus disorder prediction 120 141 - -
Cmo12g00629 448 SUPERFAMILY AF0104/ALDC/Ptd012-like 169 285 - -
Cmo12g00629 448 MobiDBLite consensus disorder prediction 53 154 - -
Cmo12g00629 448 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 8 365 - -
Cmo12g00629 448 MobiDBLite consensus disorder prediction 288 362 - -
Cmo12g00629 448 ProSiteProfiles PPC domain profile profile. 165 308 IPR005175 -
Cmo12g00629 448 CDD DUF296 170 273 IPR005175 -
Cmo12g00629 448 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 365 IPR039605 GO:0003680
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02098 Cmo12g00629 CCT
Cmo05g00982 Cmo12g00629 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00025 Cmo-Chr9:132209 Cmo12g00629 Cmo-Chr12:3929478 8.48E-48 dispersed
Cmo12g00629 Cmo-Chr12:3929478 Cmo16g01203 Cmo-Chr16:8608087 1.43E-71 dispersed
Cmo01g02098 Cmo-Chr1:14534772 Cmo12g00629 Cmo-Chr12:3929478 3.74E-105 wgd
Cmo12g00629 Cmo-Chr12:3929478 Cmo05g00982 Cmo-Chr5:7907590 4.41E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00629 - - cmax:111496396 584.334