Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00631 ATGAAAAAGCAAATTCTCAGCCCTTTCCTTCCCTCCTTGTGTTTTTCCTCCGCCGCCGCCTCCTCCCCCTCCCTCTCCTCTCCGCCGCCGCCGCCGCCTTCTCCTCCGTATCTCTCTATCAAACCCGCCTTCTTCCTACACTCCCTGGATCTCTCTCTCTCTCTCTCTCTGTTCCTGTCTGGCCCATCTCATCCCCCTTTCTTTCTCATTTTATTTCTAGGGGGTTTGCTTCTGCTATGTGGGTTTCTCTCTAATTCCCCAATTCTCCACCACTTCATTGAATTCTACGTACCCTTTGTGTCTCTGTTTATATTGTATACTGGGTGTTCATTTCTTTGGATTTCTCCACTAATAATGGCTTATCAGCATATTCCGGTTCCTAGTTCCGTTTCTGGATCAACTTCCAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTCGTTGGTGGCTTGGCTTGGGAGACTCAGAGCGACACTATGAGGCACTACTTTGAGCAGTTTGGGGAGATTCTTGAAGCCGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCAGGATCCAGAGTCAGCTAGAAGAGCTTGCTCAGATCCTACTCCAATTATTGATGGCAGGCGAGCCAATTGTAATCTGGCTTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGACGTTTTAGACCGCCTGCAGTCTATGTTGGACGAATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGCTACCAACAACCGGTTTCTTATCCTTATCAGCAGGGACTTGCATATCCTCCTTATAGTTATGCTACTTATGGACCTGAGTATGTCTACCCACAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCAAGCCCTACTTTTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGATATGGAGCAGTACATGGATATGGAATGCCAAGTCCTCAGATCGTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACAATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAACCACAGTTTGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA 1182 46.95 MKKQILSPFLPSLCFSSAAASSPSLSSPPPPPPSPPYLSIKPAFFLHSLDLSLSLSLFLSGPSHPPFFLILFLGGLLLLCGFLSNSPILHHFIEFYVPFVSLFILYTGCSFLWISPLIMAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3949107 3953065 - CmoCh12G006310.1 Cmo12g00631 393319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00631 393 SUPERFAMILY RNA-binding domain, RBD 116 238 IPR035979 GO:0003676
Cmo12g00631 393 CDD RRM_RBM24_RBM38_like 150 225 - -
Cmo12g00631 393 Gene3D - 128 238 IPR012677 -
Cmo12g00631 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 227 IPR000504 GO:0003723
Cmo12g00631 393 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 119 389 - -
Cmo12g00631 393 PANTHER BOULE-RELATED 119 389 IPR037366 GO:0003729
Cmo12g00631 393 SMART rrm1_1 151 223 IPR000504 GO:0003723
Cmo12g00631 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 208 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00631 - - - csv:101211023 508.834
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00978 Cmo12g00631 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00529 Cmo-Chr5:2552550 Cmo12g00631 Cmo-Chr12:3949107 1.70E-52 dispersed
Cmo09g00552 Cmo-Chr9:2633701 Cmo12g00631 Cmo-Chr12:3949107 7.29E-50 dispersed
Cmo09g01205 Cmo-Chr9:9125440 Cmo12g00631 Cmo-Chr12:3949107 1.93E-53 dispersed
Cmo12g00125 Cmo-Chr12:774906 Cmo12g00631 Cmo-Chr12:3949107 1.94E-49 dispersed
Cmo12g00631 Cmo-Chr12:3949107 Cmo17g00527 Cmo-Chr17:5161082 8.38E-42 dispersed
Cmo12g00631 Cmo-Chr12:3949107 Cmo05g00978 Cmo-Chr5:7887989 4.16E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g44 . . . . . . . . Cmo05g00978 Cmo12g00631 . . . Car12g00668 . . Cpe07g00603 . . . . . . . Cla08g00924 Cam08g1369 Cec08g0952 Cco08g1071 Clacu08g1077 . Cre08g0861 . . . . . . . Cme03g01324 Blo17g00909 Blo18g00730 . Bda01g01575 Bpe02g01768 . Bma01g00691 . . . . Cma12g00695 Cma05g00958 Car05g00841 . Cpe11g00771 . . . . . . . . . . . . . . . Lsi08g00767 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006014 1 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00631 Cmo_Chr12 FPKM 69.667854 70.435806 80.645966 80.80896 112.102318 112.713432 106.572884 105.569901 100.532333 95.311829