Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00634 ATGATCCCTTTTAGAGCCTTGTTTCTTTGTTCCTTGCTGTTTGTGGTCGTATATTCCGATGCTCCTCCGGATGGCGATAAGACACCTGATGTTGAAGTTGATAAGATAAACGATAAAGGAATCGATCTTGAAAAGGCTGATGAATATTGGCAAAAACGAGCTGCTGAAGCTCAAAAGGCTGCTCAAAAGGCCTTCAATCCTGACCCTGATTCCGTTGCTGATAACTTCAACGCAGCCGTTGGCCAGGAGATAGTGAACAGCAACAATTCAAGGAGGAGCTTGAGGAGATACAGAGGTCCATGCTTGGCGACCAACCCCATAGACAGATGCTGGAGGTGCGACCCAAATTGGGACAAGAATCGAAAAAAGCTAGCCGAATGTCCATTAGGGTTCGGCCACCAAACCATCGGCGGCAAGAGAGGTCCCATTTACGTGGTGACAGACGCCTCCGATGAAAACCTAGTCGACCCCAAGCCTGGAACCCTACGCCACGCGGTTGTCCAAAACGGCCCAAGATGGATCATATTCGGGCGCAGCATGATCATCAGGCTGTCCCAAGAGCTCATAATCTCAAGCAACAAGACCATCGACGGCCGCGGCTTCAATGTCCACATAGCCTTCGGCGCAGGGCTCACTCTTCAATTCGTGCATAATATCATCATCCATGGCCTTCATATCCATGACATTATTTCCAAATCTGGTGGAATGATTAGAGATGCATTTGATCATTATGGGTTCCGAACACAAAGCGATGGCGATGGTATTTCAATCTTTGGAGGCTCTCACATTTGGATCGATCATGTTTCAATGTACAATTGCCAAGACGGGTTAATTGATGCCATTATGGGTTCCACTGCCATTACAATTTCCAATAGTCATTTTACTCACCATAACGAGGTTATGTTATTTGGAGCCAGTGATAGCTATAAGGAAGATTCTATAATGCAAATAACCCTAGCATTCAACCATTTTGGGAGGGGATTGGTGCAAAGAATGCCAAGGTGTAGATTTGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGCTTATGTATGCCATTGGGGGCAGCCAGCACCCCACCATTGTTAGCCAAGGGAACCGTTTCATAGCCCCTCCGAACCCAAGCGCGAAACAGATAACGAAGAGAGAGTATGCCGATGAGTCCGAATGGAAGAATTGGTCATGGCGGTCGGAGGGAGATTTGATGATCAACGGGGCGTACTTTGTTCCGGCGGGGGATCAAACCAAGGGGAAGAAGAGCGATTTCTCAAGATATGATATGATTAAATTCAAGCCAGGAGCCTACGTGAAAAGGCTTACACGCTTCGCTGGTACACTTGAGTGTCAAGTAGGCAAGCCATGCTAA 1371 46.97 MIPFRALFLCSLLFVVVYSDAPPDGDKTPDVEVDKINDKGIDLEKADEYWQKRAAEAQKAAQKAFNPDPDSVADNFNAAVGQEIVNSNNSRRSLRRYRGPCLATNPIDRCWRCDPNWDKNRKKLAECPLGFGHQTIGGKRGPIYVVTDASDENLVDPKPGTLRHAVVQNGPRWIIFGRSMIIRLSQELIISSNKTIDGRGFNVHIAFGAGLTLQFVHNIIIHGLHIHDIISKSGGMIRDAFDHYGFRTQSDGDGISIFGGSHIWIDHVSMYNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYKEDSIMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPSAKQITKREYADESEWKNWSWRSEGDLMINGAYFVPAGDQTKGKKSDFSRYDMIKFKPGAYVKRLTRFAGTLECQVGKPC 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4004691 4006668 + CmoCh12G006340.1 Cmo12g00634 393322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00634 456 SMART amb_all 179 376 IPR002022 -
Cmo12g00634 456 Gene3D - 104 449 IPR012334 -
Cmo12g00634 456 Pfam Pectate lyase, N terminus 46 94 IPR007524 GO:0030570
Cmo12g00634 456 PANTHER PECTATE LYASE 44 456 - -
Cmo12g00634 456 PANTHER PECTATE LYASE 18-RELATED 44 456 IPR045032 GO:0030570
Cmo12g00634 456 Pfam Pectate lyase 188 370 IPR002022 -
Cmo12g00634 456 SUPERFAMILY Pectin lyase-like 105 447 IPR011050 -
Cmo12g00634 456 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Cmo12g00634 456 PRINTS Pollen allergen Amb family signature 151 176 IPR018082 -
Cmo12g00634 456 PRINTS Pollen allergen Amb family signature 187 203 IPR018082 -
Cmo12g00634 456 PRINTS Pollen allergen Amb family signature 251 272 IPR018082 -
Cmo12g00634 456 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cmo12g00634 456 PRINTS Pollen allergen Amb family signature 353 372 IPR018082 -
Cmo12g00634 456 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Cmo12g00634 456 PRINTS Pollen allergen Amb family signature 427 450 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00962 Cmo-Chr5:7722814 Cmo12g00634 Cmo-Chr12:4004691 0 dispersed
Cmo12g00634 Cmo-Chr12:4004691 Cmo14g00614 Cmo-Chr14:3100858 0 dispersed
Cmo12g00634 Cmo-Chr12:4004691 Cmo04g01712 Cmo-Chr4:8678089 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00634 K01728 - csv:101217922 710.294