Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00634 | ATGATCCCTTTTAGAGCCTTGTTTCTTTGTTCCTTGCTGTTTGTGGTCGTATATTCCGATGCTCCTCCGGATGGCGATAAGACACCTGATGTTGAAGTTGATAAGATAAACGATAAAGGAATCGATCTTGAAAAGGCTGATGAATATTGGCAAAAACGAGCTGCTGAAGCTCAAAAGGCTGCTCAAAAGGCCTTCAATCCTGACCCTGATTCCGTTGCTGATAACTTCAACGCAGCCGTTGGCCAGGAGATAGTGAACAGCAACAATTCAAGGAGGAGCTTGAGGAGATACAGAGGTCCATGCTTGGCGACCAACCCCATAGACAGATGCTGGAGGTGCGACCCAAATTGGGACAAGAATCGAAAAAAGCTAGCCGAATGTCCATTAGGGTTCGGCCACCAAACCATCGGCGGCAAGAGAGGTCCCATTTACGTGGTGACAGACGCCTCCGATGAAAACCTAGTCGACCCCAAGCCTGGAACCCTACGCCACGCGGTTGTCCAAAACGGCCCAAGATGGATCATATTCGGGCGCAGCATGATCATCAGGCTGTCCCAAGAGCTCATAATCTCAAGCAACAAGACCATCGACGGCCGCGGCTTCAATGTCCACATAGCCTTCGGCGCAGGGCTCACTCTTCAATTCGTGCATAATATCATCATCCATGGCCTTCATATCCATGACATTATTTCCAAATCTGGTGGAATGATTAGAGATGCATTTGATCATTATGGGTTCCGAACACAAAGCGATGGCGATGGTATTTCAATCTTTGGAGGCTCTCACATTTGGATCGATCATGTTTCAATGTACAATTGCCAAGACGGGTTAATTGATGCCATTATGGGTTCCACTGCCATTACAATTTCCAATAGTCATTTTACTCACCATAACGAGGTTATGTTATTTGGAGCCAGTGATAGCTATAAGGAAGATTCTATAATGCAAATAACCCTAGCATTCAACCATTTTGGGAGGGGATTGGTGCAAAGAATGCCAAGGTGTAGATTTGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGCTTATGTATGCCATTGGGGGCAGCCAGCACCCCACCATTGTTAGCCAAGGGAACCGTTTCATAGCCCCTCCGAACCCAAGCGCGAAACAGATAACGAAGAGAGAGTATGCCGATGAGTCCGAATGGAAGAATTGGTCATGGCGGTCGGAGGGAGATTTGATGATCAACGGGGCGTACTTTGTTCCGGCGGGGGATCAAACCAAGGGGAAGAAGAGCGATTTCTCAAGATATGATATGATTAAATTCAAGCCAGGAGCCTACGTGAAAAGGCTTACACGCTTCGCTGGTACACTTGAGTGTCAAGTAGGCAAGCCATGCTAA | 1371 | 46.97 | MIPFRALFLCSLLFVVVYSDAPPDGDKTPDVEVDKINDKGIDLEKADEYWQKRAAEAQKAAQKAFNPDPDSVADNFNAAVGQEIVNSNNSRRSLRRYRGPCLATNPIDRCWRCDPNWDKNRKKLAECPLGFGHQTIGGKRGPIYVVTDASDENLVDPKPGTLRHAVVQNGPRWIIFGRSMIIRLSQELIISSNKTIDGRGFNVHIAFGAGLTLQFVHNIIIHGLHIHDIISKSGGMIRDAFDHYGFRTQSDGDGISIFGGSHIWIDHVSMYNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYKEDSIMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPSAKQITKREYADESEWKNWSWRSEGDLMINGAYFVPAGDQTKGKKSDFSRYDMIKFKPGAYVKRLTRFAGTLECQVGKPC | 456 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4004691 | 4006668 | + | CmoCh12G006340.1 | Cmo12g00634 | 393322 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00634 | 456 | SMART | amb_all | 179 | 376 | IPR002022 | - | |
Cmo12g00634 | 456 | Gene3D | - | 104 | 449 | IPR012334 | - | |
Cmo12g00634 | 456 | Pfam | Pectate lyase, N terminus | 46 | 94 | IPR007524 | GO:0030570 | |
Cmo12g00634 | 456 | PANTHER | PECTATE LYASE | 44 | 456 | - | - | |
Cmo12g00634 | 456 | PANTHER | PECTATE LYASE 18-RELATED | 44 | 456 | IPR045032 | GO:0030570 | |
Cmo12g00634 | 456 | Pfam | Pectate lyase | 188 | 370 | IPR002022 | - | |
Cmo12g00634 | 456 | SUPERFAMILY | Pectin lyase-like | 105 | 447 | IPR011050 | - | |
Cmo12g00634 | 456 | PRINTS | Pollen allergen Amb family signature | 127 | 144 | IPR018082 | - | |
Cmo12g00634 | 456 | PRINTS | Pollen allergen Amb family signature | 151 | 176 | IPR018082 | - | |
Cmo12g00634 | 456 | PRINTS | Pollen allergen Amb family signature | 187 | 203 | IPR018082 | - | |
Cmo12g00634 | 456 | PRINTS | Pollen allergen Amb family signature | 251 | 272 | IPR018082 | - | |
Cmo12g00634 | 456 | PRINTS | Pollen allergen Amb family signature | 331 | 350 | IPR018082 | - | |
Cmo12g00634 | 456 | PRINTS | Pollen allergen Amb family signature | 353 | 372 | IPR018082 | - | |
Cmo12g00634 | 456 | PRINTS | Pollen allergen Amb family signature | 395 | 419 | IPR018082 | - | |
Cmo12g00634 | 456 | PRINTS | Pollen allergen Amb family signature | 427 | 450 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00962 | Cmo-Chr5:7722814 | Cmo12g00634 | Cmo-Chr12:4004691 | 0 | dispersed | |
Cmo12g00634 | Cmo-Chr12:4004691 | Cmo14g00614 | Cmo-Chr14:3100858 | 0 | dispersed | |
Cmo12g00634 | Cmo-Chr12:4004691 | Cmo04g01712 | Cmo-Chr4:8678089 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00634 | K01728 | - | csv:101217922 | 710.294 |