Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00637 | ATGGATCCACCTACTCTGATGAACCAAGGGTCATTTCCTAATGACGCTAATGCCAATGCGAATGCGACGGCGTACAATCTCTCCGAGATGTGGCAGTTCCCAATTAATGGCGGAACTGGCGTTGAGGAATCTGGAGGTGGGCTTGGATTGAGAATGGCTCAGTTTGCTCATAATTTGGGGCAGTTTGGAGAGATTTCCATGGAGAATCCAGAAGTTTCGCGCGGTGATCCAGTGAGTCAGAGAGTAGTAGGTCATGGCCATGGCGGTTCCAAGAAGCGGCGTGATGCAGAGCTCGATTCGGCTAAGGCCAGTTCCACCAGTAATGGCAACAATGGCAATAGCGGCGGGGCGAATGTCTCTGCTGGAAAACGCCTTAAAACAGCAGCATGTAGAGATGATAATCACGCATCTAAAACAGAAGCAGAACCCAGATCTGGCAAGGCCGAGTGTAACTCCCAGCCCCCACCAGAACAACCCAAACAGGATTACATTCATGTGCGAGCAAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCTGAACGGGCTAGAAGAGAAAAGATAAGTGACAGAATGAAAATTCTTCAGGATTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCGCTTCAGCACCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCCAGAGTTAGTCCTGGCATTGAAGTGTTTCCTCCTAAAGATTATGGTCAGCAGACATTCGATACAACTGGTGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCAGCCGTGGCCCATCGCCAGAATGGCTACACATGCAGATCGGTGGGGGCTTCGAAAGAACGACATAG | 885 | 47.91 | MDPPTLMNQGSFPNDANANANATAYNLSEMWQFPINGGTGVEESGGGLGLRMAQFAHNLGQFGEISMENPEVSRGDPVSQRVVGHGHGGSKKRRDAELDSAKASSTSNGNNGNSGGANVSAGKRLKTAACRDDNHASKTEAEPRSGKAECNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRVSPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSSRGPSPEWLHMQIGGGFERTT | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4055791 | 4059513 | + | CmoCh12G006370.1 | Cmo12g00637 | 393325 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00637 | 294 | MobiDBLite | consensus disorder prediction | 101 | 120 | - | - | |
Cmo12g00637 | 294 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 170 | 239 | IPR036638 | GO:0046983 | |
Cmo12g00637 | 294 | Pfam | Helix-loop-helix DNA-binding domain | 176 | 223 | IPR011598 | GO:0046983 | |
Cmo12g00637 | 294 | MobiDBLite | consensus disorder prediction | 68 | 160 | - | - | |
Cmo12g00637 | 294 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 172 | 222 | IPR011598 | GO:0046983 | |
Cmo12g00637 | 294 | CDD | bHLH_AtBPE_like | 162 | 247 | - | - | |
Cmo12g00637 | 294 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 294 | IPR024097 | GO:0006355 | |
Cmo12g00637 | 294 | MobiDBLite | consensus disorder prediction | 126 | 145 | - | - | |
Cmo12g00637 | 294 | PANTHER | BNAC05G07950D PROTEIN | 1 | 294 | - | - | |
Cmo12g00637 | 294 | SMART | finulus | 178 | 228 | IPR011598 | GO:0046983 | |
Cmo12g00637 | 294 | Coils | Coil | 219 | 239 | - | - | |
Cmo12g00637 | 294 | Gene3D | - | 169 | 242 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00176 | Cmo-Chr10:801591 | Cmo12g00637 | Cmo-Chr12:4055791 | 2.37E-88 | dispersed | |
Cmo11g00134 | Cmo-Chr11:680598 | Cmo12g00637 | Cmo-Chr12:4055791 | 2.52E-90 | dispersed | |
Cmo12g00637 | Cmo-Chr12:4055791 | Cmo14g01559 | Cmo-Chr14:12449597 | 1.42E-46 | dispersed | |
Cmo12g00637 | Cmo-Chr12:4055791 | Cmo05g00968 | Cmo-Chr5:7792316 | 9.39E-150 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10749 | PF00010 | HLH | 1.20E-08 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00637 | - | - | csv:101209222 | 437.187 |