Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00637 ATGGATCCACCTACTCTGATGAACCAAGGGTCATTTCCTAATGACGCTAATGCCAATGCGAATGCGACGGCGTACAATCTCTCCGAGATGTGGCAGTTCCCAATTAATGGCGGAACTGGCGTTGAGGAATCTGGAGGTGGGCTTGGATTGAGAATGGCTCAGTTTGCTCATAATTTGGGGCAGTTTGGAGAGATTTCCATGGAGAATCCAGAAGTTTCGCGCGGTGATCCAGTGAGTCAGAGAGTAGTAGGTCATGGCCATGGCGGTTCCAAGAAGCGGCGTGATGCAGAGCTCGATTCGGCTAAGGCCAGTTCCACCAGTAATGGCAACAATGGCAATAGCGGCGGGGCGAATGTCTCTGCTGGAAAACGCCTTAAAACAGCAGCATGTAGAGATGATAATCACGCATCTAAAACAGAAGCAGAACCCAGATCTGGCAAGGCCGAGTGTAACTCCCAGCCCCCACCAGAACAACCCAAACAGGATTACATTCATGTGCGAGCAAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCTGAACGGGCTAGAAGAGAAAAGATAAGTGACAGAATGAAAATTCTTCAGGATTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCGCTTCAGCACCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCCAGAGTTAGTCCTGGCATTGAAGTGTTTCCTCCTAAAGATTATGGTCAGCAGACATTCGATACAACTGGTGTTGCGTTTGGTTCACAAGCAACAAGAGAATACAGCAGCCGTGGCCCATCGCCAGAATGGCTACACATGCAGATCGGTGGGGGCTTCGAAAGAACGACATAG 885 47.91 MDPPTLMNQGSFPNDANANANATAYNLSEMWQFPINGGTGVEESGGGLGLRMAQFAHNLGQFGEISMENPEVSRGDPVSQRVVGHGHGGSKKRRDAELDSAKASSTSNGNNGNSGGANVSAGKRLKTAACRDDNHASKTEAEPRSGKAECNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRVSPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSSRGPSPEWLHMQIGGGFERTT 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4055791 4059513 + CmoCh12G006370.1 Cmo12g00637 393325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00637 294 MobiDBLite consensus disorder prediction 101 120 - -
Cmo12g00637 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 239 IPR036638 GO:0046983
Cmo12g00637 294 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Cmo12g00637 294 MobiDBLite consensus disorder prediction 68 160 - -
Cmo12g00637 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
Cmo12g00637 294 CDD bHLH_AtBPE_like 162 247 - -
Cmo12g00637 294 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 294 IPR024097 GO:0006355
Cmo12g00637 294 MobiDBLite consensus disorder prediction 126 145 - -
Cmo12g00637 294 PANTHER BNAC05G07950D PROTEIN 1 294 - -
Cmo12g00637 294 SMART finulus 178 228 IPR011598 GO:0046983
Cmo12g00637 294 Coils Coil 219 239 - -
Cmo12g00637 294 Gene3D - 169 242 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00176 Cmo-Chr10:801591 Cmo12g00637 Cmo-Chr12:4055791 2.37E-88 dispersed
Cmo11g00134 Cmo-Chr11:680598 Cmo12g00637 Cmo-Chr12:4055791 2.52E-90 dispersed
Cmo12g00637 Cmo-Chr12:4055791 Cmo14g01559 Cmo-Chr14:12449597 1.42E-46 dispersed
Cmo12g00637 Cmo-Chr12:4055791 Cmo05g00968 Cmo-Chr5:7792316 9.39E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10749 PF00010 HLH 1.20E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00637 - - csv:101209222 437.187