Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00639 ATGTCGTTGAGTAGACCCAGCCCGTCCACAAACACAGGAGGATCCTCCTCCTCCTCCTCTTCACAATCAAGACACACTTCAAGAATTCTCACTCAAACCTCCATAGATGCAAAGCTCCACTCCCACTTCCAACACTCCGCTTCTTCCTTCGACTACTCTTCTTCAATCCATCTCACAGCCAACCCACCATCAACCACCACCACCCCCACCACCACCGCATACCTCCACCACATCCAACGCTCCAACCTCATCCAACCCTTCGGCTGCCTCATAGCCCTCCACCCAACCACCCACAAACTCATCGCCTTCAGCCAAAACGCCCCTGAATTCCTCACCACAGTCTCCCACACCGTCCCCACCATCTCCGACCGCCCTGTCCTCGCCTTTGGCACCACCCTCCATTCCATCTTCACCCCTCCCACCGCCACAGCCCTCCTCAAAGCTCTAGCCTTTCCCGACGTCACTCTCCTCAACCCCATTCTCGTCCACTCCAAATCCTCACAAAAACCCTTCTACGCCATTCTCCACCGTGTCACCGGTAGCCTCATCATCGACTTCGAACCCGTCAACCCCGACGAAGTCCCCGTCACCGCAGCCGGTGCTCTCCAATCATATAAACTCGCAGCCAAAGCCATCACTCGCCTCCAAGCTCTCCCTAGTGGAAGCATGGCCAGGCTTTGTGACACCATGGTTCAAGAAGTGTTTGAACTCACAGGATATGATCGAGTCATGGCATATAAATTCCATGATGATGATCATGGGGAGGTGTTCTCTGAGGTTACAAAGCCTGGACTTGACCCATATCTTGGATTGCATTATCCAGCCACTGACATCCCACAAGCTGCAAGGTTCTTATTCATGAAGAACAAGGTTAGAATGATTGTGGACTGCAAAGCCAAGCATGTCAAGGTGATTCAAGACCCAAATCTTGAGTTTGACTTGACATTATGTGGGTCAACATTGAGAGCTCCTCATAGTTGCCATTTACAATATATGGAGAATATGGATTCAATTGCATCTTTAGTTATGGCAATTGTGGTGAATGAGGAAGAACATGAAGAACAATTTGATCATAAGAACAAGAGAAAAAAATTATGGGGTTTGGTGGTTTGTCATAACACAACTCCAAGATTTGTTCCCTTTCCTCTTAGATATGCATGTGAATTTCTAGCTCAAGTTTTTGCAATTCATGTCAACAAAGAATTGGAATTGGAGAATCAAATTTTGGAGAAGAACATCTTAAGAACTCAAACGCTTTTGTGTGATATGTTGATGCGTGATGCACCATTAGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTGAAGTCAGATGGGGCTGCATTGTTGTACAATGATAAGGTATGGAGATTAGGGATGACTCCTAATGATTTTGAGCTTCATGATATTGCTTCATGGATTTTGGAGTATCATGTGGATTCGACTGGATTGAGTACGGATAGCTTGTACGATGCGGGGTATCATGGCGCGGTTTCTCTAGGAGACGGCGTGTGTGGGATGGCGGCGGTGAGGCTAGGTTGCAACGACATGATTTTTTGGTTCCGATCGCATGCTGCATCGGAGATTAGGTGGGGCGGGGCAAAGCATGAGGCGGGTGAGAAGGATGATGGAAGGAGAATGCATCCTAGGTCATCTTTCAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCTATTCATTCTTTGCAGCTTATACTAAGAAACACTTATAAAGATAAAGAGATTAATAAAAGTTCAATACAATCAACACTTAGTGACCTGAAAATTGATGGGAGGCAAGAGATTGAATCAGTGACATGTGAGATGGTGAGGTTGATTGAAACGGCTAGTGTTCCAATTTTGGCTGTTGATGTGGATGGGCTTGTTAATGGGTGGAACTCAAAAATTGCGGAATTGACTGGAATTTGTGTTGACAAGGCTATTGGCAAGCATTTGTTGACACTGGTGGAAGATTCTTCGTTGGAAACTGTGAAGAAGATCCTAATAGTAAATGCATGTGCAAGCAAAGACTTGTGTGAGAACGTTGTGGGAGTATGCTTCGTAGCACAAGACATCACCCATGAAAAGAAAGTGATGGACAAGTTCACAAAATTACAAGGCGATTACAAAGCCATAGTACAAAACCCCAACCCACTAATCCCTCCAATATTTGGGGTAGACGAATTCGGTTGGTGCACTGAGTGGAACTTAGCAATGGCAAATCTAAGTGGATGGTCAAGAGAAGAAGTGCTGAACAAGATGCTTTTGGGGGAAGTTTTTGGGTCATGCTGCCATGTAAAGAACCAAGAAGCCTTTGTGAATCTTGGGATTGTTTTGAACAATGCCATGAGTGGCCAAGATTCTGATAAGATATCATTTGGGTTCTTTGCAAGAGATGGGATGTTTGTGGAATGTCTTCTTTGTGTGAATAAGATAATGGATAGAGATGGGGAAGTGATTGGGGTTTTTTGCTTCTTGCAGCTTGCTAGCCAAGAGCTGCAACAAGCTTTGAATGTTCAAAAGTTGTGTGAGAGAACGGCTTTGAAAAGGTTGAAGGCTTTGGGATATATTAAGAGGCAGATCCAAAATCCTCTTTGTGGGATTGTTTTTTCGAGTAAGATGTTGGAGAGATCTCAGTTGGGTGATGAACAGAACCAGCTTTTGCTTAATAGTGGTGATTGTCAAAGGCAGATCTTTAAGGTTCTTCATGATTCGGATGATCTTGATAAGATTATTGAAGGCTTCATTGATTTAGAAATGGTTGAGTTCTCATTACACGAAGCATTAGTGGTATCAATTAGTCAAGTAATGATGAAGAGCAAAGGCAAAGGTATCCAAATAGTAAACGAGGTAGCAGAAGAGATCATGTCCGAAACCTTATATGGAGACAGTTTGAGACTTCAACAAGTAATGGCTGATTTCTTGTTGATATCAGTAAATTACGCACCAACAGGAAGCAGCATTATGGTTTCAACAAATATGACAAAGGATGAATCAGGGAAGTCAGTGAATCTTGTGCATGTGGAGTTCAGGATAACATATGTCGGTGGTGGCATGCCAGAATCGTTGTTGAATGAGATGTTTGGGAATGATGAGGAGGCGTCTGAAGAAGGTTTTAGCCTTCTGGTGAGTAGAAAGTTGGTGAAGTTGATGAATGGAGAGGTGAGATATGTGAGGGAAGCAGCCAATTCAACCTTCATCATAACTCTTCAGCTTGCTGCAGCTCATAAATAG 3264 44.15 MSLSRPSPSTNTGGSSSSSSSQSRHTSRILTQTSIDAKLHSHFQHSASSFDYSSSIHLTANPPSTTTTPTTTAYLHHIQRSNLIQPFGCLIALHPTTHKLIAFSQNAPEFLTTVSHTVPTISDRPVLAFGTTLHSIFTPPTATALLKALAFPDVTLLNPILVHSKSSQKPFYAILHRVTGSLIIDFEPVNPDEVPVTAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMIVDCKAKHVKVIQDPNLEFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEHEEQFDHKNKRKKLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYNDKVWRLGMTPNDFELHDIASWILEYHVDSTGLSTDSLYDAGYHGAVSLGDGVCGMAAVRLGCNDMIFWFRSHAASEIRWGGAKHEAGEKDDGRRMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDKEINKSSIQSTLSDLKIDGRQEIESVTCEMVRLIETASVPILAVDVDGLVNGWNSKIAELTGICVDKAIGKHLLTLVEDSSLETVKKILIVNACASKDLCENVVGVCFVAQDITHEKKVMDKFTKLQGDYKAIVQNPNPLIPPIFGVDEFGWCTEWNLAMANLSGWSREEVLNKMLLGEVFGSCCHVKNQEAFVNLGIVLNNAMSGQDSDKISFGFFARDGMFVECLLCVNKIMDRDGEVIGVFCFLQLASQELQQALNVQKLCERTALKRLKALGYIKRQIQNPLCGIVFSSKMLERSQLGDEQNQLLLNSGDCQRQIFKVLHDSDDLDKIIEGFIDLEMVEFSLHEALVVSISQVMMKSKGKGIQIVNEVAEEIMSETLYGDSLRLQQVMADFLLISVNYAPTGSSIMVSTNMTKDESGKSVNLVHVEFRITYVGGGMPESLLNEMFGNDEEASEEGFSLLVSRKLVKLMNGEVRYVREAANSTFIITLQLAAAHK 1087
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4071927 4077025 + CmoCh12G006390.1 Cmo12g00639 393327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00639 1087 PANTHER TWO-COMPONENT HISTIDINE KINASE 15 1085 - -
Cmo12g00639 1087 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 192 IPR035965 -
Cmo12g00639 1087 Coils Coil 399 419 - -
Cmo12g00639 1087 PANTHER PHYTOCHROME A 15 1085 - -
Cmo12g00639 1087 SMART HKATPase_4 972 1084 IPR003594 -
Cmo12g00639 1087 MobiDBLite consensus disorder prediction 1 28 - -
Cmo12g00639 1087 ProSiteProfiles PAS repeat profile. 615 678 IPR000014 -
Cmo12g00639 1087 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 222 392 IPR016132 -
Cmo12g00639 1087 SUPERFAMILY GAF domain-like 202 399 - -
Cmo12g00639 1087 Pfam PAS fold 718 837 IPR013767 GO:0006355
Cmo12g00639 1087 Pfam PAS fold 618 677 IPR013767 GO:0006355
Cmo12g00639 1087 Gene3D PAS domain 731 844 - -
Cmo12g00639 1087 Pfam PAS fold 73 189 IPR013654 GO:0006355
Cmo12g00639 1087 ProSiteProfiles Histidine kinase domain profile. 866 1084 IPR005467 -
Cmo12g00639 1087 SUPERFAMILY GAF domain-like 410 587 - -
Cmo12g00639 1087 Gene3D PAS domain 77 325 - -
Cmo12g00639 1087 SMART pas_2 617 682 IPR000014 -
Cmo12g00639 1087 SMART pas_2 717 787 IPR000014 -
Cmo12g00639 1087 ProSitePatterns Phytochrome chromophore attachment site signature. 322 331 IPR013516 -
Cmo12g00639 1087 CDD PAS 729 837 IPR000014 -
Cmo12g00639 1087 Pfam GAF domain 223 402 IPR003018 GO:0005515
Cmo12g00639 1087 Gene3D - 924 1086 IPR036890 -
Cmo12g00639 1087 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 972 1082 IPR003594 -
Cmo12g00639 1087 Gene3D - 407 580 IPR043150 -
Cmo12g00639 1087 Gene3D PAS domain 607 707 - -
Cmo12g00639 1087 SUPERFAMILY PYP-like sensor domain (PAS domain) 732 835 IPR035965 -
Cmo12g00639 1087 PRINTS Phytochrome signature 322 343 IPR001294 GO:0006355|GO:0009584
Cmo12g00639 1087 PRINTS Phytochrome signature 517 536 IPR001294 GO:0006355|GO:0009584
Cmo12g00639 1087 PRINTS Phytochrome signature 237 256 IPR001294 GO:0006355|GO:0009584
Cmo12g00639 1087 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355|GO:0009584
Cmo12g00639 1087 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355|GO:0009584
Cmo12g00639 1087 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355|GO:0009584
Cmo12g00639 1087 PRINTS Phytochrome signature 137 159 IPR001294 GO:0006355|GO:0009584
Cmo12g00639 1087 PRINTS Phytochrome signature 550 568 IPR001294 GO:0006355|GO:0009584
Cmo12g00639 1087 Gene3D - 203 563 IPR029016 -
Cmo12g00639 1087 ProSiteProfiles PAS repeat profile. 718 796 IPR000014 -
Cmo12g00639 1087 Pfam Phytochrome region 415 590 IPR013515 GO:0006355|GO:0009584
Cmo12g00639 1087 SUPERFAMILY PYP-like sensor domain (PAS domain) 621 677 IPR035965 -
Cmo12g00639 1087 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 917 1080 IPR036890 -
Cmo12g00639 1087 PIRSF Phytochrome_conventional 7 679 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmo12g00639 1087 PIRSF Phytochrome_conventional 675 1087 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmo12g00639 1087 CDD PAS 626 679 IPR000014 -
Cmo12g00639 1087 SMART gaf_1 222 412 IPR003018 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00639 Cmo-Chr12:4071927 Cmo19g00869 Cmo-Chr19:8367133 0 dispersed
Cmo12g00639 Cmo-Chr12:4071927 Cmo05g00967 Cmo-Chr5:7775625 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00639 K12120 - csv:101219585 1759.96