Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00648 | ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAACCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGCGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAG | 828 | 49.52 | MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4168500 | 4171625 | + | CmoCh12G006480.1 | Cmo12g00648 | 393336 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00648 | 275 | MobiDBLite | consensus disorder prediction | 251 | 275 | - | - | |
Cmo12g00648 | 275 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC | 68 | 275 | - | - | |
Cmo12g00648 | 275 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 87 | 267 | IPR009044 | GO:0003677|GO:0006355 | |
Cmo12g00648 | 275 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 80 | 254 | IPR009044 | GO:0003677|GO:0006355 | |
Cmo12g00648 | 275 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 68 | 275 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
Cmo12g00648 | 275 | Pfam | Whirly transcription factor | 95 | 229 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00923 | Cmo-Chr1:5228431 | Cmo12g00648 | Cmo-Chr12:4168500 | 3.98E-47 | dispersed | |
Cmo12g00648 | Cmo-Chr12:4168500 | Cmo05g00952 | Cmo-Chr5:7664738 | 3.38E-159 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10750 | PF08536 | Whirly | 2.40E-59 | CL0609 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00648 | - | - | mcha:111019296 | 434.876 |