Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00648 ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAACCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGCGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAG 828 49.52 MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4168500 4171625 + CmoCh12G006480.1 Cmo12g00648 393336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00648 275 MobiDBLite consensus disorder prediction 251 275 - -
Cmo12g00648 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 68 275 - -
Cmo12g00648 275 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 267 IPR009044 GO:0003677|GO:0006355
Cmo12g00648 275 Gene3D Transcriptional Coactivator Pc4; Chain A 80 254 IPR009044 GO:0003677|GO:0006355
Cmo12g00648 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 68 275 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cmo12g00648 275 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00648 - - - mcha:111019296 434.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00923 Cmo-Chr1:5228431 Cmo12g00648 Cmo-Chr12:4168500 3.98E-47 dispersed
Cmo12g00648 Cmo-Chr12:4168500 Cmo05g00952 Cmo-Chr5:7664738 3.38E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g10 . . . . . . . . . Cmo12g00648 . . . Car12g00685 . . Cpe07g00604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00715 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00648 . 69 275 Whirly Transcription Factor Family AT1G14410 70.0 7.6e-87 317.8
Cmo05g00952 . 69 272 Whirly Transcription Factor Family AT1G14410 71.9 1.3e-86 317.0
Cmo01g00923 . 41 213 Whirly Transcription Factor Family AT1G71260 61.8 1.4e-58 223.8
Cmo12g00648 . 80 244 Whirly Transcription Factor Family AT1G71260 50.6 4.2e-44 175.6
Cmo05g00952 . 68 272 Whirly Transcription Factor Family AT2G02740 73.3 2.0e-87 319.7
Cmo12g00648 . 47 275 Whirly Transcription Factor Family AT2G02740 66.5 5.0e-86 315.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10750 PF08536 Whirly 2.40E-59 CL0609 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00648 Cmo_Chr12 FPKM 9.303419 11.064832 0.364226 1.227927 2.10007 0.789819 1.955539 0.810812 1.267526 1.313263