Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00648 ATGCTGCGTCTTCAATGGCTGTCTTCTTCCTTGCTTCCGCCATTAAACCCCCCCGAGCTCTGCGCACAACCCTGTAAGAACCCCAGACGATGCGGTTTCAACTCCTCTCGCCAACTCTTCACTCTCACCGCTACACGAAAACCTTCTCCAAAATGCCAGTACGCGTCCTGGAACACGCAGCAGCCTGCCTTCGAACCAGCCTCTCAGACCGATTCATTTTCGCCACAAACAAGCGCCGGCGCTGCCGCGGCTTTGCCACCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGAAAGGCTGCCCTGTCCATCGAGCCTAGGCCACCAGAGTTTACACCTATAGATTCGGGGGCGTTCAAAGTATCCAGGCAAGGATTTGTAATGCTTCAGCTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTTTCATTATCACTGACAGAATTGGGAAGTTTAGTCGCCCTTGGCCCACGGGAGTCTTGCGAATTTTTCCATGATCCCTACAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTCGAGCCTCTTCCAGATGGTTCTGGACATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTAGATGAGAGCATTTATATTCCCATCACCAAAGCCGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGATGGCATACCATTGCGAACACCACGATGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCGAATCCCAGATATGGTGGTGAGTCGGGTGGCTTCGAATGGAGTAGATAG 828 49.52 MLRLQWLSSSLLPPLNPPELCAQPCKNPRRCGFNSSRQLFTLTATRKPSPKCQYASWNTQQPAFEPASQTDSFSPQTSAGAAAALPPRFFVGHSIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTTMRPEDSSRVNNANPRYGGESGGFEWSR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4168500 4171625 + CmoCh12G006480.1 Cmo12g00648 393336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00648 275 MobiDBLite consensus disorder prediction 251 275 - -
Cmo12g00648 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY3, CHLOROPLASTIC 68 275 - -
Cmo12g00648 275 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 267 IPR009044 GO:0003677|GO:0006355
Cmo12g00648 275 Gene3D Transcriptional Coactivator Pc4; Chain A 80 254 IPR009044 GO:0003677|GO:0006355
Cmo12g00648 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 68 275 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cmo12g00648 275 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00923 Cmo-Chr1:5228431 Cmo12g00648 Cmo-Chr12:4168500 3.98E-47 dispersed
Cmo12g00648 Cmo-Chr12:4168500 Cmo05g00952 Cmo-Chr5:7664738 3.38E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10750 PF08536 Whirly 2.40E-59 CL0609 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00648 - - mcha:111019296 434.876