Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00651 ATGTCTGTATGGGGTTGGGTTGGCCAGATTTATGCGATGTCCTCACCACTCTGTTCGTCAATTCGGGCATTGGCACCGCAGTGTTGGCGGCGGACGAACTTGAGATTCTTCATATTGCTTCAATCCAAGAGATGTGTAGGCTTCGCGCCTCGCTTCGTTGCTTGTTTGAGCAGCAATGACGACTCTGTTGCAATCCCCAAACCGGTGCCGCTCGCCTTCGATCCTGTGGAGGAGATGTACGGACTTGGCGTCGATTTAAAACCAAGGAATTCAAATTCCAGCGCTCCTGAACCCAGGTCCTGGTTTGGTCCAAATGGTCAGTATATTAGAGAGCTACCGTGTCCAAGTTGCCGAGGCAGGGGCTATGCGCCGTGTACGGAATGTGGAATTGAAAGATCCCGTGCAGACTGTTCCGTGTGTAATGGAAAGGGTATAGTGACCTGCCACCAATGCTTGGGAGATCGTGTCATATGGGAAGAGTCCATTGATGAACGACCATGGGAGAAAGCACGCTCCACTTCTCCATTAAGAATGAAGGAAGACGATGAAGTTGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCGAAGCGTGTTTACCAATCACCTCCTCCTGAAGTTGGATTGAAGATCAGCCGATCATTAAAAAGTCTCAATGCCAAAACAGGTCTATTTAGTAAGAGAATGAAGATAATCCATCGTGACCCCACTCTTCATGCCCAGAGAGTGGCTGCAATTAAGAAAGCCAAAGGAAGTGCTGAAGCCAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTCAGTGATCCAAAAAATCGTCAAAAGCGGAGCATTGCAATGAAAGGAATAAAATTTTACTGTAAAAACTGTGGACGTGAGGGGCATCGAAGACACTATTGTCCAGAACTTAAGGGTGATTCAATTGATAGGCGATTCAGATGTCGAGTATGTGGAGAGAAGGGCCATAACAGAAGGACCTGTAAGAAGTCTAGGTTGAATGGTAAACCGATGAGCGCAACAATTCAGTGTCATTGCACGATATGTGGTGGTAAGGGTCACAGCAGTAGGAACTGTTCGAAGTCCGAGATGAGAAATTCAAATAAAGGTATACATTATCCCCAACATCAGAATCCTGGCAATGTGTTGAGCCTGAATTTGATCAAGGGAGATAGGATGACTAATGAAAGCAGCAGAGTGAGGCAGTATCGTTGTAGGATCTGCGAAGAAAATGGTCACAATCGGCAGAATTGTCCCAATATCGACACGAAAGTTAACCATACAACTCGTAGAAGAACATACAGCTGCAAACTATGTCATGAAAAAGGGCATAACAGTAGAACATGCCCAGTTATAAAGATGAACAATCTGTAG 1374 45.12 MSVWGWVGQIYAMSSPLCSSIRALAPQCWRRTNLRFFILLQSKRCVGFAPRFVACLSSNDDSVAIPKPVPLAFDPVEEMYGLGVDLKPRNSNSSAPEPRSWFGPNGQYIRELPCPSCRGRGYAPCTECGIERSRADCSVCNGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPTLHAQRVAAIKKAKGSAEARKRTSEALKAFFSDPKNRQKRSIAMKGIKFYCKNCGREGHRRHYCPELKGDSIDRRFRCRVCGEKGHNRRTCKKSRLNGKPMSATIQCHCTICGGKGHSSRNCSKSEMRNSNKGIHYPQHQNPGNVLSLNLIKGDRMTNESSRVRQYRCRICEENGHNRQNCPNIDTKVNHTTRRRTYSCKLCHEKGHNSRTCPVIKMNNL 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4187024 4199488 + CmoCh12G006510.1 Cmo12g00651 393339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00651 457 ProSiteProfiles Zinc finger CCHC-type profile. 288 303 IPR001878 GO:0003676|GO:0008270
Cmo12g00651 457 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 20 366 - -
Cmo12g00651 457 SUPERFAMILY Retrovirus zinc finger-like domains 286 332 IPR036875 GO:0003676|GO:0008270
Cmo12g00651 457 SUPERFAMILY Retrovirus zinc finger-like domains 395 427 IPR036875 GO:0003676|GO:0008270
Cmo12g00651 457 Gene3D - 392 452 - -
Cmo12g00651 457 Gene3D - 285 339 - -
Cmo12g00651 457 ProSiteProfiles Zinc finger CCHC-type profile. 314 330 IPR001878 GO:0003676|GO:0008270
Cmo12g00651 457 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 395 451 - -
Cmo12g00651 457 SMART c2hcfinal6 314 330 IPR001878 GO:0003676|GO:0008270
Cmo12g00651 457 SMART c2hcfinal6 345 361 IPR001878 GO:0003676|GO:0008270
Cmo12g00651 457 SMART c2hcfinal6 404 420 IPR001878 GO:0003676|GO:0008270
Cmo12g00651 457 SMART c2hcfinal6 287 303 IPR001878 GO:0003676|GO:0008270
Cmo12g00651 457 SMART c2hcfinal6 435 451 IPR001878 GO:0003676|GO:0008270
Cmo12g00651 457 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 395 451 - -
Cmo12g00651 457 ProSiteProfiles Zinc finger CCHC-type profile. 346 361 IPR001878 GO:0003676|GO:0008270
Cmo12g00651 457 Coils Coil 177 197 - -
Cmo12g00651 457 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 20 366 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00651 - - csv:101211176 721.85