Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00652 ATGTCGATCTCTTCTTTCTCCGATTGCTTCATTGACTCTCACCTACTCTGTGATGAGGAATCCTCCGGTATTTTTCCCGGAGAGTCGCTGGAGTACTTGACGGATTTTGAATCGGCGGATAGTAGTGAGGATTCTATCGCTGGTTTCATAGAGGATGAGCGGCACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCGGTCTCAATCGCTGGACTCTTCCGCTAGAGCTGACTCTGTTGCATGGATTCTCAAGGTTCACTCATATTACGGTTTTCAACCACTCACCGCATACCTCTCCGTGAACTACTTGGATCGTTTCCTTTATTCTCGCCCCTTGCCGGAAACAAATGGGTGGAAGATGCAGCTCCTTTCAGTGGCTTGTTTGTCACTTGCAGCAAAAATGGAGGAACCCCTTGTTCCTTCTTTCCTGGATCTCCAGATTGGAGGAGCAAAACATATATTTGAGCCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTGCGATCTGTAACACCCTTGAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCAGCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACAGAAATTATTCTGTCCAATCTTCGAGACGCTAGCTTTCTCGAGTACTGGCCCTCCTGCATCGCTGCCGCAGCCTTACTATGTGCGGCAAATGAAATTCCAAATTTGACCCTGTTGAATCCTGAACACGCGGAGTCTTGGTGCAACGGACTGAGCAAAGAAAAAATTGGTGGGTGTTATCGGCTAATGCAGCAGCCGTTAACATCGAAAGTGATAGTGCCACTCCGAGTTCGAATCCGAGCTGGGTTGAGGTACATTGACTCATCATCCTCATCCTCCCCATCATCAACATTACCTTTTAAAAGAAGAAAATTGAATAATTGCGTGTACCCAGAAGATGACAAAGAAAATTCCAAACTTAGAGCAGAGCAGTAA 990 46.26 MSISSFSDCFIDSHLLCDEESSGIFPGESLEYLTDFESADSSEDSIAGFIEDERHFVPGIDYLSRFRSQSLDSSARADSVAWILKVHSYYGFQPLTAYLSVNYLDRFLYSRPLPETNGWKMQLLSVACLSLAAKMEEPLVPSFLDLQIGGAKHIFEPRTIRRMELLVLTTLNWRLRSVTPLSFIGFFAYKVDPSGTFSSFLNSRSTEIILSNLRDASFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAESWCNGLSKEKIGGCYRLMQQPLTSKVIVPLRVRIRAGLRYIDSSSSSSPSSTLPFKRRKLNNCVYPEDDKENSKLRAEQ 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4203093 4206213 - CmoCh12G006520.1 Cmo12g00652 393340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00652 329 Pfam Cyclin, C-terminal domain 178 272 IPR004367 -
Cmo12g00652 329 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Cmo12g00652 329 SUPERFAMILY Cyclin-like 160 273 IPR036915 -
Cmo12g00652 329 SUPERFAMILY Cyclin-like 40 175 IPR036915 -
Cmo12g00652 329 CDD CYCLIN 76 168 IPR013763 -
Cmo12g00652 329 Gene3D - 59 176 - -
Cmo12g00652 329 Pfam Cyclin, N-terminal domain 47 175 IPR006671 -
Cmo12g00652 329 PANTHER CYCLIN-D1-1 25 312 - -
Cmo12g00652 329 Gene3D - 50 239 - -
Cmo12g00652 329 SMART Cyclin_C_2 178 300 IPR004367 -
Cmo12g00652 329 PANTHER CYCLINS 25 312 IPR039361 -
Cmo12g00652 329 SMART cyclin_7 81 169 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00652 Cmo-Chr12:4203093 Cmo16g00330 Cmo-Chr16:1507017 2.50E-58 dispersed
Cmo12g00652 Cmo-Chr12:4203093 Cmo05g00921 Cmo-Chr5:7189219 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00652 K18810 - csv:101210686 545.043