Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00675 ATGGCGGGGAAGCCTAGCTCGGTTTCCTTCAGGGTTCCGTACCGGAACCTCCAGGATGCGGAAGTAGAGATGGTGGCTGTCGATGAACAGCAGCTCCAAGGGATTGATCTCAATTCTCCTTCTTCTAGTAGATGTGCCAATGGAAGCCCAGACGGTTCGTCGTCAACGCCTCATGTTAGATCTACGCCAAATAGTTTGATTATCTTAATTCTCAGTTGTACTATCGCTGCCGGTGTTCAATTTGGTTGGGCATTACAGCTCTCCTTACTAACTCCCTATATTCAGACACTTGGAATCGAGCATGCATTTTCTTCATTTATTTGGCTTTGCGGTCCCATCACTGGTCTCGTGGTTCAACCATGTGTTGGTATATGGAGTGATAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCTTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGGTATATACTAGGAGATACGGAGGAACATTGCAGAGTATATAAAGGTACACGAACAAGGGCAGCTATTATTTTTGTAATAGGCTTTTGGATGCTTGATCTTGCGAACAATACAGTGCAGGGTCCTGCCCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCAGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGTTTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCTTTCCTTTTGAGTGATGCTTGCTGTGAAGCCTGTGGAAACCTTAAAGCAGCATTTCTTATCGCTGTGGTTTTTCTAACCATATGTACTCTTGTTACCATATATTTTGCCCATGAAGTTCCACTTACTGCTGTAGATCAACTACCACGTTTATCAGATTCTGCTCCTCTGTTGAATGGGAATGAACAAAGTAGTCCTAGTACTGTAAAATCGGAACTTAACAGTCCAAATGGGAGCAATGACAACTATGGCTATCAAAAAGATGTGAATTTGGAAATTTCAAAATCAATAATTGAGGAAAATCACAGTGAAAGTTATTACGATGGTCCTGCAACAGTGGTAGTCAAATTGCTAACCAGTTTAAGGCATTTACCACCGGCCATGCATTCAGTGCTTCTTGTGATGGCTCTTAGCTGGTTATCCTGGTTTCCCTTCTTCTTATTTGATACGGATTGGATGGGAAGGGAAGTGTACCATGGGGACCCAAAAGGAAGTTTGGCTGATGAACAGGTTTATGATCAGGGTGTCAGAGCAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTCATAGAGCCGATGTGTCAGCGCATGGGAGCAAGACTTGTCTGGGCAATAAGCAACTTTATTGTGTTTGCATGCATGACGGGAACTACTATTATCAGTTTAATATCTGTCAGTCAATACTCTGAAGGAATCGAACGCGTTATCGGAGGAAACTCAACAATAAAAAATGCTGCCTTGGCTGTTTTTGTTCTTCTTGGTTTTCCTCTTGCTATAACTTATAGCGTTCCCTTCTCTTTGACAGCAGAATTGACCGCTGATTCTGGTGGTGGCCAAGGATTGGCTATTGGAGTTCTCAATCTTGCAGTTGTTATTCCCCAGATGATTGTATCACTGGGTGCTGGGCCATGGGATGCATTATTCAGTGGAGGAAACATTCCTGCATTTGCTTTGGCTTCTGTTTGTGCGCTTGCGGCTGGAGTTGTTGCGCTTCTTAGATTGCCTGATCACACCAACAGTTCTTTCAAATCCACAGGTTTTCATTTTGGTTGA 1815 43.03 MAGKPSSVSFRVPYRNLQDAEVEMVAVDEQQLQGIDLNSPSSSRCANGSPDGSSSTPHVRSTPNSLIILILSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTEEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSDACCEACGNLKAAFLIAVVFLTICTLVTIYFAHEVPLTAVDQLPRLSDSAPLLNGNEQSSPSTVKSELNSPNGSNDNYGYQKDVNLEISKSIIEENHSESYYDGPATVVVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLADEQVYDQGVRAGAFGLLLNSVVLGISSFFIEPMCQRMGARLVWAISNFIVFACMTGTTIISLISVSQYSEGIERVIGGNSTIKNAALAVFVLLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVVIPQMIVSLGAGPWDALFSGGNIPAFALASVCALAAGVVALLRLPDHTNSSFKSTGFHFG 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4526412 4532580 + CmoCh12G006750.1 Cmo12g00675 393363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00675 604 Pfam Major Facilitator Superfamily 78 393 IPR011701 GO:0022857|GO:0055085
Cmo12g00675 604 PANTHER SUGAR TRANSPORTER 39 604 - -
Cmo12g00675 604 SUPERFAMILY MFS general substrate transporter 54 591 IPR036259 -
Cmo12g00675 604 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 39 604 - -
Cmo12g00675 604 MobiDBLite consensus disorder prediction 36 59 - -
Cmo12g00675 604 MobiDBLite consensus disorder prediction 306 332 - -
Cmo12g00675 604 CDD MFS_SLC45_SUC 69 586 - -
Cmo12g00675 604 Gene3D MFS general substrate transporter like domains 62 587 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00675 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101205348 1063.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00901 Cmo-Chr5:6793450 Cmo12g00675 Cmo-Chr12:4526412 0 dispersed
Cmo12g00183 Cmo-Chr12:1194417 Cmo12g00675 Cmo-Chr12:4526412 6.51E-152 dispersed
Cmo12g00675 Cmo-Chr12:4526412 Cmo01g00506 Cmo-Chr1:2439390 8.20E-139 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g00506 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.9 6.0e-181 631.3
Cmo05g00870 . 10 485 Sucrose Transporter Gene Family AT1G22710 61.9 1.0e-175 614.0
Cmo12g00183 . 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 5.7e-139 491.9
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.8 6.0e-178 621.3
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT2G14670 62.4 1.9e-171 599.7
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 9.7e-136 481.1
Cmo01g00506 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.8 9.3e-149 524.2
Cmo05g00870 . 7 399 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-142 503.8
Cmo12g00675 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.0 1.0e-182 637.1
Cmo05g00901 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.4 8.2e-177 617.5
Cmo01g00506 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 9.3e-163 570.9
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G06170 59.6 1.9e-160 563.1
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.4 1.1e-174 610.5
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G43610 62.2 3.0e-169 592.4
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.3e-132 470.7
Cmo12g00183 . 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 4.1e-206 714.9
Cmo05g00870 . 1 479 Sucrose Transporter Gene Family AT1G09960 50.9 4.7e-133 472.2
Cmo01g00506 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 3.1e-129 459.5
Cmo01g00506 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-173 605.1
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71880 59.7 2.4e-169 592.8
Cmo12g00183 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 2.3e-135 479.9
Cmo01g00506 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 2.2e-167 586.3
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71890 58.7 3.6e-165 578.9
Cmo01g00506 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-173 605.1
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71880 59.7 2.4e-169 592.8
Cmo12g00183 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 2.3e-135 479.9
Cmo01g00506 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.9 6.0e-181 631.3
Cmo05g00870 . 10 485 Sucrose Transporter Gene Family AT1G22710 61.9 1.0e-175 614.0
Cmo12g00183 . 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 5.7e-139 491.9
Cmo12g00675 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.0 1.0e-182 637.1
Cmo05g00901 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.4 8.2e-177 617.5
Cmo12g00183 . 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 4.1e-206 714.9
Cmo05g00870 . 1 479 Sucrose Transporter Gene Family AT1G09960 50.9 4.7e-133 472.2
Cmo01g00506 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 3.1e-129 459.5
Cmo01g00506 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 2.2e-167 586.3
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71890 58.7 3.6e-165 578.9
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.4 1.1e-174 610.5
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G43610 62.2 3.0e-169 592.4
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.3e-132 470.7
Cmo01g00506 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.8 9.3e-149 524.2
Cmo05g00870 . 7 399 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-142 503.8
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.8 6.0e-178 621.3
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT2G14670 62.4 1.9e-171 599.7
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 9.7e-136 481.1
Cmo01g00506 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 9.3e-163 570.9
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G06170 59.6 1.9e-160 563.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00675 Cmo_Chr12 FPKM 12.879683 15.659397 16.232206 16.739416 8.616703 8.68913 7.71243 9.207246 8.866457 8.987555