Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00797 ATGGGCATCGTGGACGGAGGCACTCAAACTCAGTCAGCAAATCCGAACATGGGAAGAGAAAAGCCGAAGGTGGTCGTGATTATGGGGCCGACTGGTTCTGGGAAGTCACGTCTCGCCATCGATTTGGCTTCTCACTTCCCCGTCGAGATCATCAACGCCGATTCTATGCAGGTTTATCGCGGCTTGGACGTTCTCACAAACAAAGTTCCTCCCCAAGACCAAAATGGAGTACCGCATCATCTTTTAGGTACAGTGAGTCCAGACGTTGAATTCACGGCTAAAGACTTTCGAGATTCTGCCATTCCTGTTATTGATGACATATTATCACGTGGATGCTTGCCAATGATAGTGGGTGGAACGAATTATTATATACAGGCTCTTTTTAGCCCACTTCTTCTGGATGATTCTGCTAAAAATATCGGCGGAAGTTGCTCCAGTTATCTTGGAGATGAGGAGATGGATATTGAGTTGGATGAGGGAAGAGATAGTTTGAAGTATGACCATAGCTATCTTAAAGAGATTGATCCAGTTTCGGCTGGTAGACTCCATCCGAATAACCACCGAAAACTCAAGGAGATCCAATTAAACCAGGAAGATTCTAAGATGCAGTTGAGAAATAGATCCAAGGAGCTAGCCCTCCCATTTGACCATGGCCCGTTGATCAAAGGCCATGTGCGGTGCCTATGGAGCCCCTCCATCTGTGCCAAGCCATCAAAACATGCACACAAGATAAATCAATACCTGAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGGAAGGCTGCTGAGAGTTGGGGTCAAGCTGATAGTTTCAGATACGATTGCTGCTTGATATGTGTCGATGCTTCTATTCCACAAATTGATGGACATGTTGATTCTAGAGTTGATAGCATGTTGGCTGCTGGATTACTTGATGAGGTCTATGAAATTTACAATCCAAATGCGAACTATACTAGAGGATTGTGGCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTTTTGAGGTATTATGTACCTAACGGAAGATGCGACGAAGATAGCAATGAGCTTAGTCCAAAAAATTCAATGGAGTGTACTGAGATTTTGAAAGAGAATATGAGGTCCATCCTAAATTCAACAAGTGCTGGCGAATCCAGTTTGCTACTGAAAGAAGCCATAGATAATGTAAAGTTAAATACTAGAAGACTGGTTCGTCGTCAGCGGAGGCAGATAAAGAGACTGGAAACTTTGTTTGGATGGAAGATCCACTATGTTGATTCCACGGAATATATAACAAGCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCAGTCCAGATAATTAGGTCGTTCCTTGAAGATTGTTGTTCAGCGACTGAGACAATGAACCCACAGAGTTCTGGGCAAACAATCAAAAAGGACTTGTGGACACAATATGTTTGCCAGGCTTGTGGGAACAGAGTACTAAGAGGAGCACATGAATGGGAACAACACAATCTAGGTCGATCGCATCGAAAGCGAATGTATCGGCTTAAGAAGCGTGAAGGGTCGTCTTTCCTGCAACAGAAACTACCTCAAGAGTAA 1587 44.05 MGIVDGGTQTQSANPNMGREKPKVVVIMGPTGSGKSRLAIDLASHFPVEIINADSMQVYRGLDVLTNKVPPQDQNGVPHHLLGTVSPDVEFTAKDFRDSAIPVIDDILSRGCLPMIVGGTNYYIQALFSPLLLDDSAKNIGGSCSSYLGDEEMDIELDEGRDSLKYDHSYLKEIDPVSAGRLHPNNHRKLKEIQLNQEDSKMQLRNRSKELALPFDHGPLIKGHVRCLWSPSICAKPSKHAHKINQYLSLYYRTGVLPSTLFQGKAAESWGQADSFRYDCCLICVDASIPQIDGHVDSRVDSMLAAGLLDEVYEIYNPNANYTRGLWQAIGVREFEEFLRYYVPNGRCDEDSNELSPKNSMECTEILKENMRSILNSTSAGESSLLLKEAIDNVKLNTRRLVRRQRRQIKRLETLFGWKIHYVDSTEYITSKVEDSWTAQVVEPAVQIIRSFLEDCCSATETMNPQSSGQTIKKDLWTQYVCQACGNRVLRGAHEWEQHNLGRSHRKRMYRLKKREGSSFLQQKLPQE 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6852925 6871148 + CmoCh12G007970.1 Cmo12g00797 393485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00797 528 Hamap tRNA dimethylallyltransferase [miaA]. 24 454 IPR018022 GO:0008033
Cmo12g00797 528 MobiDBLite consensus disorder prediction 1 20 - -
Cmo12g00797 528 Gene3D - 22 477 IPR027417 -
Cmo12g00797 528 Gene3D Classic Zinc Finger 478 519 - -
Cmo12g00797 528 MobiDBLite consensus disorder prediction 1 17 - -
Cmo12g00797 528 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 454 - -
Cmo12g00797 528 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 454 IPR039657 -
Cmo12g00797 528 Pfam IPP transferase 57 410 - -
Cmo12g00797 528 Gene3D - 150 192 - -
Cmo12g00797 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 131 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00797 Cmo-Chr12:6852925 Cmo06g01441 Cmo-Chr6:10436722 7.95E-19 dispersed
Cmo12g00797 Cmo-Chr12:6852925 Cmo08g00355 Cmo-Chr8:2196219 2.57E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00797 K00791 - csv:101202758 749.199