Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00817 ATGCCGATCTCTCCATCCCTTCAACTCCTTAGATTTCCTTCCCAGGCACTATCCTCATCCTCTCACCACCGTCTCATCTCTGATCTTGCCTCTGAATCGCGCTTCTTCCGATCTCCATGGCTTGCCTCTTTGGCTCCGTTGCGGAACTGCCGGATGAAGTTATCGTCGACAACGAAATGTTTCTCCATGTCCAATGATGATGAGAATTGGAGTGATTCGGAAGCGTTGGTGTCCGATTTGGACGTAGGGGGAGATCGCGAGGATGATATTGGTGTTCAGCAAGAGAATCCTGTGGCCACTGTTGCTTCTGCGCAGACGATTGCTTCCTCGTCGCCGAGTGATTATCTGTCGCTGGCGATCCGAGAGCTGGTTTATGAGGTGGTAGAGGTTAAAGCCAATGGAGCCATATCCACTAGGAAGATTAACAGACGCCAGCTGTTGAAGTCAAGTGGGCTTCGTCCACGTGATGTTCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTTCGTGAACATGCTATTTTGCTTAATCTGGGTTCGCTTCGAGCAATAGCTATGCGGGATTGTGTCCTTATATTTGATTATAACCGTCCTGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGCGCCAGAAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACACAGCGTTTTGAAAAGCGACTAATGAAAGTAGAACCTCGTGTTCGAGATCTGCTTGAGGTATTGCCCAACAAATTAACTGCTACTGGGTTGGAACAACTTCGTATTAGCAAGCAAACTTTGGTTGAATTAGGTTCCAGGGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTGGAGGATCCACAAGAAATACGACGTATCTGTATTATGGGAAGAAATTGCACTCTTAATAAGAGAAGTGATGTTGTGGAGTGCTCTGTTCCGCTGGATAAGCAGATTGCAGATGAAGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCTGAGATGTGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTCAATTTGAGCTCGCGGCGACTTGAGGTTAGCAGGGTGGAATTGCTTCTTCAAGTTGGGACATTTTGTGTGGCTGTTGGTGCTTTAGTTGCAGGAATATTTGGCATGAACTTACGATCTTACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATTATTGTGGGTTCGGTTGTGGCATTCTTTCTCGTGTACTCATATTTCAGAGATAGGAGAATCCTATAA 1365 44.98 MPISPSLQLLRFPSQALSSSSHHRLISDLASESRFFRSPWLASLAPLRNCRMKLSSTTKCFSMSNDDENWSDSEALVSDLDVGGDREDDIGVQQENPVATVASAQTIASSSPSDYLSLAIRELVYEVVEVKANGAISTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMRDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGAPEMPFELEVVEAALLSRTQRFEKRLMKVEPRVRDLLEVLPNKLTATGLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRSDVVECSVPLDKQIADEEEEEIEMLLENYLLRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGSVVAFFLVYSYFRDRRIL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7350047 7364394 + CmoCh12G008170.1 Cmo12g00817 393505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00817 454 CDD Mrs2_Mfm1p-like 127 453 IPR039204 -
Cmo12g00817 454 Pfam CorA-like Mg2+ transporter protein 261 444 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo12g00817 454 Gene3D - 118 201 - -
Cmo12g00817 454 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 41 454 - -
Cmo12g00817 454 Gene3D Magnesium transport protein CorA, transmembrane region 204 385 - -
Cmo12g00817 454 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 41 454 IPR039204 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00817 Cmo-Chr12:7350047 Cmo13g00277 Cmo-Chr13:2276986 4.54E-149 dispersed
Cmo12g00817 Cmo-Chr12:7350047 Cmo13g00275 Cmo-Chr13:2237131 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00817 K16075 - csv:101219314 707.983