Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00825 ATGGCCATGGCTATGGCTACGGCTACGGCCCATCACAGAGAGAGTGGCGATGGGGGTATCGATGGCCACCTTGATAGCACCGGGAAGTATGTCCGTTACACGACGGAGCAAGTGGAAGCTCTTGAGCGAGTTTATGCGGAATGTCCTAAACCGAGCTCTTTGCGGCGGCAGCAGCTAGTTCGTGATTGCCCCATTTTGGCTAACATCGAGCCAAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAGAAACAGAGGAAAGAGGCTTCTCGTTTACAGTCATTGAATAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAGAACGATAGGTTACAGAAACAAGTGTCTCAGCTCGTTTGTGAGAATGGGTCTATGCGACAACATTTGCAAACTGCTAACGCAGCAGCAGCACCAATTACTGATGCAAGCTGTGACACAGTGGCTACTGCCCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCCTGTCTATTGCAGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTACAGGAACTGCTATCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATCTTCGCCGTTTCACAGAGTTGCAGTGGAGTAGCGGCTCGAGCCTGTGGTCTTGTTAGTTTAGAGCCCATGAAGATTGACGAGATCCTAAAAGATCGCCCATCTTGGTTTCGTGATTGCCGGAGTGTTGAAGTCTTTACGACGTTTCCCACCGGTAATGGTGGGACGATCGAACTTGTTTATACGCAGGTTTACGCTCCGACTACTTTAGCACCTGCACGAGATTTTTGGACTCTAAGATACACGAAAACTTTGGAAAATGGAAATCTTGCGGTTTGTGAGAGATCGCTGTCCGGGTCGGGCACGGGGCCTAATTCAGCTTCTGCTGCTCAGTTCGTGCGAGCTGAAATGCTTCCCAGTGGTTATTTGATTCGTCCTTGCGATGGCGGAGGTTCAATCATCCACATTGTAGATCACCTAAATCTCAAGCCTTGGAGCGTGCCAGAGGTCGTGAGACCACTTTACGAATCGTCGAAGGCCGTTGCTCAGAAAATGACTATAGCAGCTTTTCGCTACGTTAGGCAAGTGGCTCAAGAGACAAGTGGTGAAGTAGTATACAGTTTAGGCAGACAACCGGCCGTTCTTCGAACGTTTAGCCAAAGATTAAGCAGAGGATTTAATGAGGCTGTTAATGGATTTAATGATGATGGATGGTCTTTGATGAACTGTGATGGAGCTGAAGATGTGAGTCTTGCCATAAATTCAAGCAAGAATGTAAATACATCGTATGATCCTGTCAACTCTCTTGCATTCCATGCGGGTGTTCTTTGTGCAAAGGCTTCCATGCTTATACAAAATGTTCCTCCAATTGCTCTAATTCGTTTCTTGAGGGAACATCGATCGGAGTGGGCTGATTTCAATGTCGATGCGTATTCCGCTGCGTCGTTGAAAACTGGTTCGTATGTATACCCGGGCATGAGACCGACCAGGTTTACAGGGAGCCAAATTATCATGCCCCTCGGCCATACAATCGAACAAGAAGAGTTGCTTGAAGTTGTAAGGCTTGAGAGTCACCCTCTTGCTCAAGAAGATACTTTTATGTCCCGGGATGTTCATCTATTGCAGATGTGTACTGGAATCGATGAGAATGCTGTTGGTGCGTGTTCCGAACTTGTGTTTGCTCCGATCAATGAGATGTTTCCTGATGATGCTGTATTGCTGCCTTCTGGTTTTAGGATCATCCCTCTACATTCTGAAACAGGTGACTCAAAACATACATGGAAGAACTCGAATAGGACTATGGATCTCACTTCCAATCTTGAAGTTGGTTCATCTGCTTCACAAGATGCTGCTGCTGCTGCTGCATCAACATCTAACTTCAGATCAGTTTTGACTATTGCCTTCCAGTTCTCGTTTGGTAGCAACCTACAGGATGACGTTGCAGCTATGGCAAGGCAGTACGTTCGGAGTGTCGTTTCAGCTGTGCAGAGGGTTGCAGTTGCCATATCTCCCTCTGGATTAAGCTTGCCATCGGAACGAAGGCTATCATCTGCTTGTCCAGAAGCTCTTACCCTGGCTCGATGGATCTGCTATAGCTACAGATGCCATACTGGAACAGAATTGGTGCTATCAGACAGTGTGGATGGTGACTCAGTGTTGAAACACCTATGGAATCATCAGGATGCAATTCTCTGTTGTTCCCTCAAGTCACTGCCCCCAGTGTTCATGTTTGCAAACCAAGCAGGCCTCGACATGTTGGAGACGACCTTGGTTGCGTTGCAAGACATCACTTTGGATAAGATTCTCGGCGACTCTGCCCTTAAGGCCTTCTCTGCTGATTTTTCCAATTTAATGCACCAGGTTACCTACTATATATATTCTCCCATTCAGTTCATTGCCAGCCATGCTTGGTTGGCTTTGCTTACATACCTGCTGGAATTTGCATATCGACAATGGGGCGCCATGCTTCCTTTGAACAAGCCATTGCATGGAAGGTTCTTGCAGAAGACGAGTCCACCGTGCACTGTCTCGCTTTCTCCTTCGTCAACTGGTCGTTCCTATGATTCTTTTCCCTGTACACTTATTGAAAATTATGTAACAGTCCAAGAAAATAGGATGGGGGGTTCTACAATTTTGTAA 2691 47.27 MAMAMATATAHHRESGDGGIDGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGSMRQHLQTANAAAAPITDASCDTVATAPQHSLRDASSPAGLLSIAEEILAAFLSKATGTAIDWVQMPGMKPGPDSVGIFAVSQSCSGVAARACGLVSLEPMKIDEILKDRPSWFRDCRSVEVFTTFPTGNGGTIELVYTQVYAPTTLAPARDFWTLRYTKTLENGNLAVCERSLSGSGTGPNSASAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLKPWSVPEVVRPLYESSKAVAQKMTIAAFRYVRQVAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNEAVNGFNDDGWSLMNCDGAEDVSLAINSSKNVNTSYDPVNSLAFHAGVLCAKASMLIQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYVYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDTFMSRDVHLLQMCTGIDENAVGACSELVFAPINEMFPDDAVLLPSGFRIIPLHSETGDSKHTWKNSNRTMDLTSNLEVGSSASQDAAAAAASTSNFRSVLTIAFQFSFGSNLQDDVAAMARQYVRSVVSAVQRVAVAISPSGLSLPSERRLSSACPEALTLARWICYSYRCHTGTELVLSDSVDGDSVLKHLWNHQDAILCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKILGDSALKAFSADFSNLMHQVTYYIYSPIQFIASHAWLALLTYLLEFAYRQWGAMLPLNKPLHGRFLQKTSPPCTVSLSPSSTGRSYDSFPCTLIENYVTVQENRMGGSTIL 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7468484 7474059 + CmoCh12G008250.1 Cmo12g00825 393513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00825 896 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 5 809 - -
Cmo12g00825 896 SUPERFAMILY Homeodomain-like 27 91 IPR009057 -
Cmo12g00825 896 Pfam MEKHLA domain 708 813 IPR013978 -
Cmo12g00825 896 SMART START_1 170 380 IPR002913 GO:0008289
Cmo12g00825 896 Coils Coil 94 125 - -
Cmo12g00825 896 ProSiteProfiles START domain profile. 161 389 IPR002913 GO:0008289
Cmo12g00825 896 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 809 IPR044830 GO:0003700
Cmo12g00825 896 MobiDBLite consensus disorder prediction 1 23 - -
Cmo12g00825 896 Gene3D - 23 95 - -
Cmo12g00825 896 ProSiteProfiles 'Homeobox' domain profile. 24 88 IPR001356 GO:0003677
Cmo12g00825 896 Pfam START domain 171 378 IPR002913 GO:0008289
Cmo12g00825 896 SMART HOX_1 26 92 IPR001356 GO:0003677
Cmo12g00825 896 CDD START_ArGLABRA2_like 165 379 - -
Cmo12g00825 896 CDD bZIP 81 120 - -
Cmo12g00825 896 Pfam Homeodomain 30 87 IPR001356 GO:0003677
Cmo12g00825 896 CDD homeodomain 29 89 IPR001356 GO:0003677
Cmo12g00825 896 SUPERFAMILY Bet v1-like 170 382 - -
Cmo12g00825 896 Gene3D - 204 385 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00896 Cmo-Chr2:5524257 Cmo12g00825 Cmo-Chr12:7468484 0 dispersed
Cmo12g00825 Cmo-Chr12:7468484 Cmo17g00742 Cmo-Chr17:7362109 0 dispersed
Cmo12g00825 Cmo-Chr12:7468484 Cmo20g00522 Cmo-Chr20:2503759 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10752 PF01852 START 2.40E-46 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00825 K09338 - cpap:110820480 1244.57