Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00831 ATGGGTGTGGCTGAAGAGTACTTGCCAGCAATGGCGATGTTGGGAATTCAAGCAATTTATGCTATTGTGACACTCATCTCTAGGGCTGCCCTTTTGGAGGGTATGAGTCCTAGAGTGTTCATCGTTTATAGGCAGGCCTTTGCCACTCTCTCTATTGCACCCATTGCTTATCTCTCCAGGTCGAAATCCATGAAGGTTTCTTTGGACCTCAAGAGCTTTTATCTCATCTTTTTTGCTGCACTTATCGGTTCAACCATGAACCACAATTTTTTCTACGAGGGACTGTTCTTAGCCAGTTCATCATTAGCAACCGCGATGGAGAATCTGATTCCGGCAGTGACATTTATAATAGCAGCAATGGTCGGAATGGAGAGTGTGAACATGACAAACGTGAGGTGCGTGGCCAAGATTGTAGGCACAGTGGTTTGTGTCGGTGGGGCTATGTTCATGGCCCTTCTAAGAGGTCCAAAGCTTCTGAACGCCACACAAGCTTCCGGTGTCAAATCTGCAATATTTGGTGTGGAAAGTGGAAGCGATCAGGCTTGGTTGTTGGGCTCACTCAGTCTGTTTGGTAGCTGTTGCTGTTGGTCAATTTGGTTGATATTGCAGGTGCCAGCAATGGCAAGCTATCCTGACAAGCTATCTTTATCAGCATGGACTTGTTTTTTTTCACTCATACAATCAGTGGGTTTCACATTATGGGTAGAGGGAGCCAATTTAGAAACGTGGAAGATTCATTCAACTACTGAACTTATTTGTTACCTCTTCTCGGGGATTTTTGGGTCAGGAGTTGCCTACTTTCTTCAAGCTTGGGGTATTTCAAAGAGAGGACCTGTGTTCTCTGCAGTGTTCAACCCCTTTTGCACCATTATTACCACTATTTTGGCAGCTATATTTCTTCATGAGGAGATTTATACTGGAAGCTTGTTGGGGGGCGTGATTGTAATTATTGGATTATATGTGGTTCTTTGGGGGAAAACAAATGATTACACGAAGGAAGAAGACAGAGGAAAGTGTAGAGTTGAAAAACAAGAAGAGGATTGTGAATCAGCTTCAACTTCGATTGAGACAGATAGCTATAAAGTTGATGTGAGGGAACCCCTTTTGTCTGGGTGTACACATCATATTGACAACTAG 1137 43.71 MGVAEEYLPAMAMLGIQAIYAIVTLISRAALLEGMSPRVFIVYRQAFATLSIAPIAYLSRSKSMKVSLDLKSFYLIFFAALIGSTMNHNFFYEGLFLASSSLATAMENLIPAVTFIIAAMVGMESVNMTNVRCVAKIVGTVVCVGGAMFMALLRGPKLLNATQASGVKSAIFGVESGSDQAWLLGSLSLFGSCCCWSIWLILQVPAMASYPDKLSLSAWTCFFSLIQSVGFTLWVEGANLETWKIHSTTELICYLFSGIFGSGVAYFLQAWGISKRGPVFSAVFNPFCTIITTILAAIFLHEEIYTGSLLGGVIVIIGLYVVLWGKTNDYTKEEDRGKCRVEKQEEDCESASTSIETDSYKVDVREPLLSGCTHHIDN 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7577721 7580923 + CmoCh12G008310.1 Cmo12g00831 393519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00831 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 326 - -
Cmo12g00831 378 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
Cmo12g00831 378 Pfam EamA-like transporter family 11 149 IPR000620 GO:0016020|GO:0016021
Cmo12g00831 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
Cmo12g00831 378 PANTHER WAT1-RELATED PROTEIN 10 346 IPR030184 GO:0016021|GO:0022857
Cmo12g00831 378 PANTHER WAT1-RELATED PROTEIN 10 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00693 Cmo-Chr5:3541755 Cmo12g00831 Cmo-Chr12:7577721 0 dispersed
Cmo12g00831 Cmo-Chr12:7577721 Cmo15g01403 Cmo-Chr15:9545809 1.01E-70 dispersed
Cmo12g00831 Cmo-Chr12:7577721 Cmo12g00832 Cmo-Chr12:7616341 0 tandem
Cmo11g00429 Cmo-Chr11:2112983 Cmo12g00831 Cmo-Chr12:7577721 3.73E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00831 - - cmax:111468623 694.115