Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00862 ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGCGAAAAATTCGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCGCCTTCTGATAGTGGGATGAGAAGATGTGGTTTGAATATAGATGGATTTAACCGTGCAGTCCATGGAAATGATAAGCCATCTGGATCCTTTAAGAGAGGAATGAGAAAAGGGTCTGAAGGACTTAAATCAATTGGTCGATCACTCAAGTTTGGAGTATCTCGAGCTGTATTTCCGGAGGATCTTAAAGAGTCAAAGAAGAAAATCTTTGATCCTCAAGACAAATTGCTCTTATTCTTGAATAAACTTTTTGTCATATCATGTTTTTTAGCAATATCGGTGGACCCGCTATTCTTTTATGTTCCTGTCATTAACCAACAGTCGAGCTGTCTTGGCATCGATAGAAAGCTGGCAATTACAGTGACAACATTGCGAACAGTTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTCGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAAAGATACTTGCGGCGGTATTTCATTATTGATTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTCTGGAGATTTCTTCAGAGGTCCAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTTTCATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTACCATTGACTTCAGAATTGAAAAGGACAACAGGCGTATTTGCAGAAACAGCCTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCACTGTGGTACTTATTAGCTGTGGAACGCAATGACACATGTTGGCAGAAGTATTGTAGTGCCCCTTGCAGGAAAAATTTCTTATATTGCGGTAACCAAGACATGGAGGGCTATTCGACTTGGAACCAGACAGGTGTGGATGCCCTAATGTCGAGATGCAAACCTGCTGATGATAATGATTCGTTTGATTTTGGAATCTTTAAACAGGCTTTGTCCTCTGGCATTGCGGCATCCAAAAATTTTGTCGGCAAATATTGTTACTGTCTATGGTGGGGCCTACAGAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGCTGAAGTGATCTTTTCTATAGCATTGGCTGTACTTGGTCTCATCCTCTTTGCACTTCTTATTGGCAACATGCAGACTTATCTTCAATCTCTAACCATAAGGCTTGAGGAAATGAGGGTGAAAAAGCGTGATTCGGAGCAATGGATGCATCATCGTTTGCTGCCACAGGAACTTCGGGAGAGAGTCAGGCGATATGATCAGTACAAGTGGTTGGAGACCCGTGGAGTCGACGAACAGAGTTTGGTTCAAACTCTCCCTAAGGATCTTAGGAGAGATATTAAGCGACATCTTTGTCTCGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAGCATGGATGAGAGGCTGCTTGATGCTATTTGTGAGCGGCTAAAACCGTGTTTGTTTACAGAGTACACTTACATAGTTCGTGAGGGTGATCCAGTCGATGAGATGCTTTTCATTATACGTGGTCGGCTCGAGAGTGTGACTACTGATGGTGGGCGGAGCGGATTTTTCAATCGTACCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACTTGGGCTCTTGACCCGAAATCTGGTTCGAATCTTCCATCTTCGACAAGGACGGTAAAGGCTATTACAGAGGTTGAGGCTTTCGCCCTCGTCGCTGAAGAGTTGAAATTCGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACGTTTCGATTCTACTCGCAACAATGGAGGACATGGGCTGCTTGCTTCATCCAAGCGGCATGGCGCCGATACTCCAAGAGAAAGACTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCGGAGGAATCCGAGACATCTCAAACGACGACCACCACAAGCGGAGGAGGCTCTTACAGTATTCGTGCAACTTTCCTAGCTTCTAAATTTGCTGCCAATGCTCTCCGAGGCGTTCAGCGATATCGCAACGCAAAGAGCGCTCAGGAGTTGATAAAATTGCAGAAGCCTCCCGAACCAGATTTTAGCGCGGATGATGCCGATTGA 2211 44.32 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGLNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCFLAISVDPLFFYVPVINQQSSCLGIDRKLAITVTTLRTVIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLFIVFLQYIPRFLRALPLTSELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCSAPCRKNFLYCGNQDMEGYSTWNQTGVDALMSRCKPADDNDSFDFGIFKQALSSGIAASKNFVGKYCYCLWWGLQNLSTLGQGLQTSTYPAEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKKRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELRQKEEVAAEESETSQTTTTTSGGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7836426 7859881 + CmoCh12G008620.1 Cmo12g00862 393550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00862 736 CDD CAP_ED 504 635 IPR000595 -
Cmo12g00862 736 Gene3D Helix hairpin bin 432 495 - -
Cmo12g00862 736 Pfam Cyclic nucleotide-binding domain 529 614 IPR000595 -
Cmo12g00862 736 Gene3D Jelly Rolls 502 622 IPR014710 -
Cmo12g00862 736 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 733 - -
Cmo12g00862 736 SMART cnmp_10 504 635 IPR000595 -
Cmo12g00862 736 SUPERFAMILY cAMP-binding domain-like 434 624 IPR018490 -
Cmo12g00862 736 Pfam Ion transport protein 109 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo12g00862 736 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo12g00862 736 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo12g00862 736 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo12g00862 736 PRINTS EAG/ELK/ERG potassium channel family signature 373 390 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo12g00862 736 PRINTS EAG/ELK/ERG potassium channel family signature 399 410 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo12g00862 736 PRINTS EAG/ELK/ERG potassium channel family signature 417 426 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo12g00862 736 PRINTS EAG/ELK/ERG potassium channel family signature 467 474 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo12g00862 736 SUPERFAMILY Voltage-gated potassium channels 101 426 - -
Cmo12g00862 736 ProSiteProfiles IQ motif profile. 640 669 IPR000048 GO:0005515
Cmo12g00862 736 MobiDBLite consensus disorder prediction 665 685 - -
Cmo12g00862 736 Gene3D - 111 429 - -
Cmo12g00862 736 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 733 - -
Cmo12g00862 736 ProSiteProfiles cAMP/cGMP binding motif profile. 504 588 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01074 Cmo-Chr11:6008422 Cmo12g00862 Cmo-Chr12:7836426 0 dispersed
Cmo12g00862 Cmo-Chr12:7836426 Cmo20g00529 Cmo-Chr20:2559226 0 dispersed
Cmo10g00459 Cmo-Chr10:2062469 Cmo12g00862 Cmo-Chr12:7836426 0 wgd
Cmo11g00422 Cmo-Chr11:2075897 Cmo12g00862 Cmo-Chr12:7836426 0 wgd
Cmo12g00862 Cmo-Chr12:7836426 Cmo05g01050 Cmo-Chr5:8475255 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00862 K05391 - csv:101219180 1345.1