Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00881 ATGAGGCTTTTCATTCTCAATTCGATTTATAGTGCCTCCAAATCTTATTTGAATCCGTGCTCATTTCAATATTGCAAGTCTTACACAAAGATTTCTGAGTATGTTAACCGAGTTCTTAGACTGAGTGTTGTTCTAAATAAACAATACTACAAAGATGAATCTCACAGCTTGAAGAACGTCTCACGTACTGGTTTCCTAAGAGCACCCTCTGTATGTTGTCTACACACACCAAGTTATGGTACACATCCCGCTGCTACTTTTTCCCCCGCATCACCAGTGAAATATTGGAACACTATCCCTCCTACGTCTCTTGGCTATCTGTCAAACCCTCGATTCTATTCATCAACTTCTAGCAGGAAGGCGGATATTACTGGAGATACTGGTGTTCCACTTGCTTCTTCTGGTGTTGAAGCGGATATCAGTAACCCCCCCGATGTTGGAAGAGACTGGCTTGAAAGAGTCAAGGATGGCTGGCAGAGTGTTGTCGATGCAGCATCTTTTACCGGACAGAAGGCTAGAGAAGTGTCTGATGAATTCTCTCCTCATGTAGATAAGCTCTTAGATTCACATCCATATCTGAAAAATGAAATTGCTCCTGTTGGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCACAAGTATTCAATGCGAAGTCCTGTTGCCATACTTTCTGGAAGCACATCTATTGAGGAAATTCCCTATGAGAAAAGCTTTTGGGGTGCCTTAGAGGATCCTTTGAGATATCTTGTTACCTTCTATGCATTTTCTCAAATTGGCAAGATGGTTGCACCAACTGCCATAGCATCAGAGTTTGTATCACAGGCGTGCAGGGGGGCTGTCATCCTTTCTCTTGTATGGTTTATTTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGGCCTCCCAAAATTTTTCAGGGCTTGATCGGGAAAAGTTACTTACCCTCGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGAAATGTTTTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGCCAAGTGGTGGAAATGGGCCTCATGACGACATCATTATTAAGTGCTGAAAAATTCCCAATCGTTGTTCCAAATTCTCTCTTTTCTAGCCAGGTAATTATAAATAAGTCGCGGGCGCAATGGCGTGCAATCACAAAGAAAATTCCTTTCCAAGTTGCTGATCTTAGTACGGTTTCTAAGATATCAGATGATATTAAGAGTATGCTTAGGTCTCACCCTAAGGGTAAAGAAGAACTTTTCTCAACAGAGCAAGATATTCTCCTCCAGTCAGTACAGATCATGAAGGAAAATGGTGCAACCTTGGGTAACTGA 1509 42.54 MRLFILNSIYSASKSYLNPCSFQYCKSYTKISEYVNRVLRLSVVLNKQYYKDESHSLKNVSRTGFLRAPSVCCLHTPSYGTHPAATFSPASPVKYWNTIPPTSLGYLSNPRFYSSTSSRKADITGDTGVPLASSGVEADISNPPDVGRDWLERVKDGWQSVVDAASFTGQKAREVSDEFSPHVDKLLDSHPYLKNEIAPVGMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSTSIEEIPYEKSFWGALEDPLRYLVTFYAFSQIGKMVAPTAIASEFVSQACRGAVILSLVWFIYRWKTNVFSRALASQNFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPFQVADLSTVSKISDDIKSMLRSHPKGKEELFSTEQDILLQSVQIMKENGATLGN 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8017112 8021272 - CmoCh12G008810.1 Cmo12g00881 393569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00881 502 Pfam Mechanosensitive ion channel 328 475 IPR006685 GO:0016020|GO:0055085
Cmo12g00881 502 SUPERFAMILY Sm-like ribonucleoproteins 370 435 IPR010920 -
Cmo12g00881 502 Gene3D - 386 434 IPR023408 -
Cmo12g00881 502 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 287 369 IPR011014 GO:0016020
Cmo12g00881 502 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 91 473 - -
Cmo12g00881 502 Gene3D - 282 384 - -
Cmo12g00881 502 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 91 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00881 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101220483 747.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00881 Cmo-Chr12:8017112 Cmo16g00807 Cmo-Chr16:4154484 1.28E-09 dispersed
Cmo12g00881 Cmo-Chr12:8017112 Cmo05g00572 Cmo-Chr5:2804121 3.10E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00881 . 149 501 Mechanosensitive Ion Channel Family AT4G00290 63.0 5.9e-133 471.9
Cmo16g00807 . 24 726 Mechanosensitive Ion Channel Family AT5G10490 56.4 9.3e-198 687.6
Cmo12g00153 . 61 686 Mechanosensitive Ion Channel Family AT5G10490 59.0 2.6e-192 669.5
Cmo05g00572 . 10 706 Mechanosensitive Ion Channel Family AT5G10490 55.2 1.4e-190 663.7
Cmo05g00572 . 10 686 Mechanosensitive Ion Channel Family AT1G58200 57.1 9.1e-201 697.6
Cmo12g00153 . 10 651 Mechanosensitive Ion Channel Family AT1G58200 55.5 2.1e-189 659.8
Cmo16g00807 . 6 695 Mechanosensitive Ion Channel Family AT1G58200 51.8 2.7e-176 616.3
Cmo20g00729 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 56.0 1.7e-263 906.4
Cmo20g00729 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 52.7 3.0e-246 849.0
Cmo20g00729 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 59.0 2.2e-284 975.7
Cmo20g00729 . 252 933 Mechanosensitive Ion Channel Family AT2G17000 61.0 3.8e-233 805.4
Cmo11g01757 . 270 793 Mechanosensitive Ion Channel Family AT2G17000 53.8 1.2e-141 501.5
Cmo01g01806 . 69 720 Mechanosensitive Ion Channel Family AT5G19520 50.4 1.4e-173 607.4
Cmo10g00779 CST 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.3 1.7e-200 696.8
Cmo01g01806 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.4 1.5e-188 657.1
Cmo11g00734 CST 59 752 Mechanosensitive Ion Channel Family AT5G12080 51.0 1.7e-184 643.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00881 Cmo_Chr12 FPKM 3.130268 5.432289 0.0 1.169888 1.889896 1.517027 2.140043 0.0 0.0 0.0